DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and GABRD

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_016856425.1 Gene:GABRD / 2563 HGNCID:4084 Length:687 Species:Homo sapiens


Alignment Length:426 Identity:118/426 - (27%)
Similarity:203/426 - (47%) Gaps:47/426 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 YVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYV 108
            |.:..| |...|.||.|..::.|..|:.|:..:|::.:.:|:||.|.:|||.     :...::.:
Human   286 YARNFR-PGIGGPPVNVALALEVASIDHISEANMEYTMTVFLHQSWRDSRLS-----YNHTNETL 344

  Fly   109 TLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMD 173
            .|.....:..|.||.:.:|:|.|....:|.:...:.|..:..:.|:.|:.:.:||.|:...||||
Human   345 GLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRITSTVACDMDLAKYPMD 409

  Fly   174 IQVCPIYIESFSSNNQKVKLRWSDSGVTLN--PELKLLQYNLGQPLELEESDGYMPEKVGNFSRL 236
            .|.|.:.:||:..:::.:...||:|...::  .:|:|.|:.:.......|...:  :..|.|.||
Human   410 EQECMLDLESYGYSSEDIVYYWSESQEHIHGLDKLQLAQFTITSYRFTTELMNF--KSAGQFPRL 472

  Fly   237 TVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--DIP 299
            :::|...|..|.::||::.||.|:|.:||.|||:...|:|.||:|.:|.:||:.|:...|  .:|
Human   473 SLHFHLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLGITTVLTMTTLMVSARSSLP 537

  Fly   300 PVAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEKGQCATVASW 364
            ..:.:||||::...|.:.|||||.|:.... .:..|:.:.....||...| :.|:......:.|.
Human   538 RASAIKALDVYFWICYVFVFAALVEYAFAH-FNADYRKKQKAKVKVSRPR-AEMDVRNAIVLFSL 600

  Fly   365 EGGAVR-----SRKATQTP-----------TTPGQTSLQG---NGGPPKPARRQSLLSVAWTDTD 410
            ....|.     ||:..:.|           ...|:|..:|   :||  :...|..|..:   |.|
Human   601 SAAGVTQELAISRRQRRVPGNLMGSYRSVGVETGETKKEGAARSGG--QGGIRARLRPI---DAD 660

  Fly   411 TGVEKIMWREIDKVSRAVFPILFFVFVLLYWPILLM 446
            |         ||..:|||||..|....::||....|
Human   661 T---------IDIYARAVFPAAFAAVNVIYWAAYAM 687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 115/419 (27%)
GABRDXP_016856425.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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