DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12344 and GABRA6

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_000802.2 Gene:GABRA6 / 2559 HGNCID:4080 Length:453 Species:Homo sapiens


Alignment Length:483 Identity:129/483 - (26%)
Similarity:210/483 - (43%) Gaps:98/483 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ILMWLSEA---TEAHMNYTAK--PRVV--LPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSINVE 75
            |::||..|   .|...|:.::  .|::  |...|...:| |...|:...|...|:|.....::..
Human    10 IILWLENALGKLEVEGNFYSENVSRILDNLLEGYDNRLR-PGFGGAVTEVKTDIYVTSFGPVSDV 73

  Fly    76 DMDFRVDMFIHQRWLESRLEI--PDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTH 138
            :|::.:|:|..|.|.:.||:.  |.:|       ::|...:....|.||.:|.|.|    .::.|
Human    74 EMEYTMDVFFRQTWTDERLKFGGPTEI-------LSLNNLMVSKIWTPDTFFRNGK----KSIAH 127

  Fly   139 KFTS----VTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRWSDSG 199
            ..|:    ..:.:|.|:.|..|:.....|.|....:|||...||:...|::....::...|. .|
Human   128 NMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWK-KG 191

  Fly   200 VTLNPEL-----KLLQYNL-GQPLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTFAPSS 258
            ...:.|:     .||||:| ||.:..|.    :....|.:..:||||..:|::|:.:||.:.|..
Human   192 PLYSVEVPEESSSLLQYDLIGQTVSSET----IKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCI 252

  Fly   259 LVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--DIPPVAYVKALDLWMAGCMLSVFAA 321
            :.|:||..|||:..:::|.|....:|.:||:.|:...|  .:|.|:|..|:|.::|.|...||:|
Human   253 MTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSA 317

  Fly   322 LAEFVVVKVL-DVQYQ-----YQVNRIPKV----------------------LPMRISNMEKGQC 358
            |.||..|... ::|.|     .|....|.|                      |..||:::   ..
Human   318 LIEFAAVNYFTNLQTQKAKRKAQFAAPPTVTISKATEPLEAEIVLHPDSKYHLKKRITSL---SL 379

  Fly   359 ATVASWEGGAVRSRK--ATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWTDTDTGVEKIMWREI 421
            ..|:|.|...|.:|.  ...||.||          ||        ||.|:..|.         :|
Human   380 PIVSSSEANKVLTRAPILQSTPVTP----------PP--------LSPAFGGTS---------KI 417

  Fly   422 DKVSRAVFPILFFVFVLLYWPILLMKSS 449
            |:.||.:||:.|..|.|:||.:.|.|.:
Human   418 DQYSRILFPVAFAGFNLVYWVVYLSKDT 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 125/473 (26%)
GABRA6NP_000802.2 Neur_chan_LBD 5..440 CDD:332142 127/476 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.