DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alka and Gabrb2

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_008765857.1 Gene:Gabrb2 / 25451 RGDID:2650 Length:506 Species:Rattus norvegicus


Alignment Length:479 Identity:132/479 - (27%)
Similarity:215/479 - (44%) Gaps:118/479 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 PSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLE---IPDDIFEEGDDYVTLLP 112
            |...|.||.|..:|.:..|:.::..:||:.:.|:..|.|.:.||.   ||.::        ||..
  Rat    53 PDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNL--------TLDN 109

  Fly   113 EVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVC 177
            .|.:..|.||.||||.|.:.:..:|.|...:.|:.:.||.|..|:....||.|:.:.||:|.|.|
  Rat   110 RVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNC 174

  Fly   178 PIYIESFSSNNQKVKLRW--SDSGVT-----LNPELKLLQYNLGQPLELEESDGYMPEKV----G 231
            .:.|||:......::..|  .|:.||     ..|:..::.|.|            :.:||    |
  Rat   175 TLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKL------------ITKKVVFSTG 227

  Fly   232 NFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFT-- 294
            ::.||::.|:.:|.||:.::||:.||.|:.:|||.|||:..||...||.|.:|.:||:.|:.|  
  Rat   228 SYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHL 292

  Fly   295 GADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKV--------------------------LDV 333
            ...:|.:.||||:|:::.||.:.||.||.|:.:|..                          |||
  Rat   293 RETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAANANNEKMRLDV 357

  Fly   334 -------------QYQ----------------YQVNRIPKVLPMRISNME-KGQCA--------- 359
                         |||                |.::....:|   :|.:| |.:.|         
  Rat   358 NKIFYKDIKQNRTQYQSLWDPTRWTTYYHFSLYMMDPHENIL---LSTLEIKNEMATSEAVMGLG 419

  Fly   360 ----TVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKP--ARRQSLLSVAWTD-TDTGVEKIM 417
                |:.:::..:::.|||.....:.|:.:|:.:....|.  .||.|.|.:...| ||...    
  Rat   420 DPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNA---- 480

  Fly   418 WREIDKVSRAVFPILFFVFVLLYW 441
               ||:.||..||::|..|.::||
  Rat   481 ---IDRWSRIFFPVVFSFFNIVYW 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 130/477 (27%)
Gabrb2XP_008765857.1 LIC 9..504 CDD:455710 132/479 (28%)

Return to query results.
Submit another query.