Protein Alignment alka and Gabrb1

DIOPT Version :10

• Sequence 1: NP_610619.2
• Gene: alka / 36145
• FlyBaseID: FBgn0033558
• Length: 449
• Species: Drosophila melanogaster
• Sequence 2: NP_037088.1
• Gene: Gabrb1 / 25450
• RGDID: 2649
• Length: 474
• Species: Rattus norvegicus
• Alignment Length: 467
• Identity: 140/467 - (29%)
• Similarity: 220/467 - (47%)
• Gaps: 94/467 - (20%)

  Fly    41 PPN--YVKE----------IR-PPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLES 92
            |.|  ||||          || .|...|.||.|...|.|..|:.::..:||:.:.|:..|.|.:.
  Rat    31 PSNMSYVKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMVSEVNMDYTLTMYFQQSWKDK 95

  Fly    93 RLE---IPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYA 154
            ||.   ||.::        ||...|.:..|.||.||||.|.:.:..:|.|...:.|:.:.||.|.
  Rat    96 RLSYSGIPLNL--------TLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYG 152

  Fly   155 ARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRWS--DSGVT-LN----PELKLLQYN 212
            .|:....||.|:.:.||:|.|.|.:.|||:......::..|:  :..|| :|    |:..::.|.
  Rat   153 LRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEGAVTGVNKIELPQFSIVDYK 217

  Fly   213 LGQPLELEESDGYMPEKV----GNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLD 273
            :            :.:||    |.:.||::.||.:|.||:.::||:.||:|:.:|||.|||:..|
  Rat   218 M------------VSKKVEFTTGAYPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYD 270

  Fly   274 AIPGRVTLLVTCMLTLVTMFT--GADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVL----- 331
            |...||.|.:|.:||:.|:.|  ...:|.:.||||:|:::.||.:.||.||.|:..|..:
  Rat   271 ASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKG 335

  Fly   332 -------------DVQYQYQVNRIP-----KVL--PMRISNMEKGQ---------CATVASWEGG 367
                         :.:.:.::|::.     .:|  .:.|.|...|.         .||:.|::..
  Rat   336 PQKKGASKQDQSANEKNKLEMNKVQVDAHGNILLSTLEIRNETSGSEVLTGVSDPKATMYSYDSA 400

  Fly   368 AVRSRKATQTPTTPGQTSLQGNGGPPKP--ARRQSLLSVAWTD-TDTGVEKIMWREIDKVSRAVF 429
            :::.||...:....|: .|..:|.|.|.  .||.|.|.|...| ||.       ..|||.||..|
  Rat   401 SIQYRKPLSSREGFGR-GLDRHGVPGKGRIRRRASQLKVKIPDLTDV-------NSIDKWSRMFF 457

  Fly   430 PILFFVFVLLYW 441
            ||.|.:|.::||
  Rat   458 PITFSLFNVVYW 469

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
alka	NP_610619.2	LIC	8..441	CDD:455710	138/465 (30%)
Gabrb1	NP_037088.1	LIC	9..472	CDD:273305	140/467 (30%)