DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and Gabrb1

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_037088.1 Gene:Gabrb1 / 25450 RGDID:2649 Length:474 Species:Rattus norvegicus


Alignment Length:467 Identity:140/467 - (29%)
Similarity:220/467 - (47%) Gaps:94/467 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 PPN--YVKE----------IR-PPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLES 92
            |.|  ||||          || .|...|.||.|...|.|..|:.::..:||:.:.|:..|.|.:.
  Rat    31 PSNMSYVKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMVSEVNMDYTLTMYFQQSWKDK 95

  Fly    93 RLE---IPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYA 154
            ||.   ||.::        ||...|.:..|.||.||||.|.:.:..:|.|...:.|:.:.||.|.
  Rat    96 RLSYSGIPLNL--------TLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYG 152

  Fly   155 ARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRWS--DSGVT-LN----PELKLLQYN 212
            .|:....||.|:.:.||:|.|.|.:.|||:......::..|:  :..|| :|    |:..::.|.
  Rat   153 LRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEGAVTGVNKIELPQFSIVDYK 217

  Fly   213 LGQPLELEESDGYMPEKV----GNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLD 273
            :            :.:||    |.:.||::.||.:|.||:.::||:.||:|:.:|||.|||:..|
  Rat   218 M------------VSKKVEFTTGAYPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYD 270

  Fly   274 AIPGRVTLLVTCMLTLVTMFT--GADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVL----- 331
            |...||.|.:|.:||:.|:.|  ...:|.:.||||:|:::.||.:.||.||.|:..|..:     
  Rat   271 ASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKG 335

  Fly   332 -------------DVQYQYQVNRIP-----KVL--PMRISNMEKGQ---------CATVASWEGG 367
                         :.:.:.::|::.     .:|  .:.|.|...|.         .||:.|::..
  Rat   336 PQKKGASKQDQSANEKNKLEMNKVQVDAHGNILLSTLEIRNETSGSEVLTGVSDPKATMYSYDSA 400

  Fly   368 AVRSRKATQTPTTPGQTSLQGNGGPPKP--ARRQSLLSVAWTD-TDTGVEKIMWREIDKVSRAVF 429
            :::.||...:....|: .|..:|.|.|.  .||.|.|.|...| ||.       ..|||.||..|
  Rat   401 SIQYRKPLSSREGFGR-GLDRHGVPGKGRIRRRASQLKVKIPDLTDV-------NSIDKWSRMFF 457

  Fly   430 PILFFVFVLLYW 441
            ||.|.:|.::||
  Rat   458 PITFSLFNVVYW 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 138/465 (30%)
Gabrb1NP_037088.1 LIC 9..472 CDD:273305 140/467 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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