DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and Gabrb3

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_058761.2 Gene:Gabrb3 / 24922 RGDID:2651 Length:473 Species:Rattus norvegicus


Alignment Length:455 Identity:133/455 - (29%)
Similarity:214/455 - (47%) Gaps:77/455 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 NYVKE----------IR-PPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLE- 95
            ::|||          || .|...|.||.|..:|.:..|:.::..:||:.:.|:..|.|.:.||. 
  Rat    35 SFVKETVDKLLKGYDIRLRPDFGGPPVCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAY 99

  Fly    96 --IPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMH 158
              ||.::        ||...|.:..|.||.||||.|.:.:..:|.|...:.|:.:.||.|..|:.
  Rat   100 SGIPLNL--------TLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRIT 156

  Fly   159 AIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRW--SDSGVTLNPELKLLQYNLGQPLELEE 221
            ...||.|:.:.||:|.|.|.:.|||:......::..|  .|..||....::|.|:::.:...:..
  Rat   157 TTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSR 221

  Fly   222 SDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCM 286
            :..:   ..|.:.||::.||.:|.||:.::||:.||.|:.:|||.|||:..||...||.|.:|.:
  Rat   222 NVVF---ATGAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTV 283

  Fly   287 LTLVTMFT--GADIPPVAYVKALDLWMAGCMLSVFAALAEFVVV--------------------K 329
            ||:.|:.|  ...:|.:.||||:|:::.||.:.||.||.|:..|                    |
  Rat   284 LTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAK 348

  Fly   330 VLDVQYQYQVNRIPK-----VLPMRISNMEKGQCA--------TVASWEGGAVRSRKATQTPTTP 381
            ..:.:.:.::||:..     :.||.:.| |..:.|        :..|::...::.||  |:....
  Rat   349 AKNDRSKSEINRVDAHGNILLAPMDVHN-EMNEVAGSVGDTRNSAISFDNSGIQYRK--QSMPKE 410

  Fly   382 GQTSLQGNGGPPKP----ARRQSLLSVAWTD-TDTGVEKIMWREIDKVSRAVFPILFFVFVLLYW 441
            |.....|:...|..    .||.|.|.:...| ||...       ||:.||.|||..|.:|.|:||
  Rat   411 GHGRYMGDRSIPHKKTHLRRRSSQLKIKIPDLTDVNA-------IDRWSRIVFPFTFSLFNLVYW 468

  Fly   442  441
              Rat   469  468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 131/453 (29%)
Gabrb3NP_058761.2 LIC 10..471 CDD:273305 133/455 (29%)

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