DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12344 and Gabrr3

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_620252.1 Gene:Gabrr3 / 192258 RGDID:621564 Length:464 Species:Rattus norvegicus


Alignment Length:500 Identity:134/500 - (26%)
Similarity:217/500 - (43%) Gaps:107/500 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ISFGLGFI-LMWL------SEATEAHMNYTAKPRVVLPPNYVKEIRP---------PSKK----- 54
            ::|.|.|. ..|:      |...|.|....:.|:    ...::|.|.         |.|:     
  Rat     3 LAFWLAFFTYTWITLMLDASAVKEPHQQCLSSPK----QTRIRETRMRKDDLTKVWPLKREQLLH 63

  Fly    55 -------------GSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDD 106
                         ||||.|...:.|..|:||:..:|||.:..::...|.:.||..|...    :.
  Rat    64 IEDHDFSTRPGFGGSPVPVGIDVQVESIDSISEVNMDFTMTFYLRHYWKDERLSFPSTT----NK 124

  Fly   107 YVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYP 171
            .:|....:.:..|.||.:|::||.:.|...|.:...:.::.:..|.::.|:.....|.|:|..:|
  Rat   125 SMTFDRRLIQKIWVPDIFFVHSKRSFIHDTTVENIMLRVHPDGNVLFSLRITVSAMCFMDFSRFP 189

  Fly   172 MDIQVCPIYIESFSSNNQKVKLRWSDSGVTLNPE--LKLLQYNLGQPLELEESDGY-MPEKVGNF 233
            :|.|.|.:.:||::.|.:.:.|.|.....:||.|  :.|.|:.:.   |...|.|. .....|.:
  Rat   190 LDTQNCSLELESYAYNEEDLMLYWKHGNKSLNTEEHISLSQFFIE---EFSASSGLAFYSSTGWY 251

  Fly   234 SRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTG--A 296
            .||.:.|...|.|...::||:.|:.|:|||||.|||:...|:|.||:|.:|.:||:.|:.||  |
  Rat   252 YRLFINFVLRRHIFFFVLQTYFPAMLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIVTGVSA 316

  Fly   297 DIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVL-DVQYQYQVNRIPKVLPMRISNMEKGQCAT 360
            .:|.|:||||:|::|....|.||.::.|:..|..| .|:...|:||..|     ||.|.......
  Rat   317 SMPQVSYVKAVDVYMWVSSLFVFLSVIEYAAVNYLTTVEEWKQLNRRGK-----ISGMYNIDAVQ 376

  Fly   361 VASWEG--------------------GAVRSRKATQTPTTPG----QTSLQGNGGPPKPARRQSL 401
            ..:::|                    .::|: |.|.:|....    :.||.||.|          
  Rat   377 AMAFDGCYHDGETDVDQTSFFLHSEEDSMRT-KFTGSPCADSSQIKRKSLGGNVG---------- 430

  Fly   402 LSVAWTDTDTGVEKIMWRE---IDKVSRAVFPILFFVFVLLYWPI 443
                         :|:...   ||..||.|||:::.:|.|.||.|
  Rat   431 -------------RIILENNHVIDTYSRIVFPVVYIIFNLFYWGI 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 131/496 (26%)
Gabrr3NP_620252.1 LIC 58..463 CDD:273305 121/440 (28%)
LGIC_ECD 79..264 CDD:355788 50/191 (26%)
Cys-loop 181..195 CDD:349787 6/13 (46%)
Interaction with SQSTM1. /evidence=ECO:0000269|PubMed:12431995 344..445 24/129 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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