DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12344 and lgc-57

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_496306.2 Gene:lgc-57 / 191636 WormBaseID:WBGene00001586 Length:473 Species:Caenorhabditis elegans


Alignment Length:442 Identity:128/442 - (28%)
Similarity:216/442 - (48%) Gaps:78/442 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 NYVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLE--------IPDD 99
            ||.:...|...:.....||..:::..::|.:.:.|||:||::..::|::.||:        :.| 
 Worm    51 NYNRNAYPLLDQDLATHVDIQMYIEGMSSFHAQSMDFQVDIYFQEKWVDHRLQHNNTKRILVKD- 114

  Fly   100 IFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQ 164
                        |::|...|.||.||.|::.|....:|.....|.:|.|.||.|..|:...:.|.
 Worm   115 ------------PKLFGLLWHPDLYFANARTASFHDVTQPNFLVWIYPNGTVWYDCRISLTVLCM 167

  Fly   165 MEFQLYPMDIQVCPIYIESFSSNNQKVKLRWSDSG-VTLNPELKLLQYNLGQPLELEESDGYMPE 228
            .:...||:|.|.|.:.|.|::.:.:::.:||:... |.:|..:::...:|.......:.|.|   
 Worm   168 QDLARYPLDSQNCGLRILSYAYDEEQLIIRWNGGNPVEVNRGIRMPDMHLKHIKFYTKRDKY--- 229

  Fly   229 KVGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMF 293
            ..|.:|.....|..:|:|.||:||::.|:||:|::|||||||.::|:||||:|.:|.:|||.|..
 Worm   230 ATGIWSSAVAEFHVDREITHHIIQSYIPTSLIVIISWFSFWLDVEAVPGRVSLSITTLLTLATQS 294

  Fly   294 TGA--DIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNM--- 353
            :.|  .:|..:.|||:|:||..||..||:|:.||.||... |:.:.:....|:.|..::.:|   
 Worm   295 SAARMALPQASDVKAIDVWMGTCMAFVFSAMIEFTVVNYC-VRRKVRTKIKPRGLSEQVHDMVAQ 358

  Fly   354 --EK------GQC--------------ATV-ASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKP 395
              ||      |.|              ||| .::|...||..         .|.||         
 Worm   359 YREKKDKFNNGNCEISYEMALQPNEDNATVQRNFEKKEVREM---------NQASL--------- 405

  Fly   396 ARRQSLLSVAWTDT-DTGVEKI-----MWREIDKVSRAVFPILFFVFVLLYW 441
            ..|:|||..:...| :..:.::     ..::||:.|||:||:.|.:|.:.||
 Worm   406 FVRRSLLPTSKRKTIEDRINRVEENRKNAQKIDRYSRALFPLAFIIFNIFYW 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 126/440 (29%)
lgc-57NP_496306.2 Neur_chan_LBD 43..217 CDD:280998 44/178 (25%)
LIC 44..460 CDD:273305 128/442 (29%)
Neur_chan_memb 255..457 CDD:280999 70/220 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.