DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and acc-2

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_501567.1 Gene:acc-2 / 183758 WormBaseID:WBGene00008280 Length:445 Species:Caenorhabditis elegans


Alignment Length:161 Identity:38/161 - (23%)
Similarity:64/161 - (39%) Gaps:43/161 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 IELKTEEDFQGVMYTRGSYYKQTEPCFVKPERAGRTLEMKFNLDQCQTVNNGEVYSNIVVVQHDP 98
            :.|||         |.|| .|..:...|.......|:|:|         ::.|:.|:.:..|..|
 Worm    44 LSLKT---------TFGS-VKAVQVSTVPTAETSATIEVK---------DSKEIKSSRLNAQLVP 89

  Fly    99 DIVTPGDA-AFAVE-CD------FRKPRG---VTVSSEIQARDSEEETPTPSSRITLTSPDPSAN 152
               .|.:. |...| ||      |....|   :.|:..|....|.:..|||:  :|.:    :|.
 Worm    90 ---KPSEVEALVTEICDSSSIAEFELKLGGFRLYVARNIADNSSLQPPPTPA--VTAS----NAT 145

  Fly   153 TQTPNEHNSVHSASGTVTFVPSRFRNASSDQ 183
            |::|..:.|..|.|..:    |:..::::||
 Worm   146 TESPESNGSASSTSLAI----SKPASSAADQ 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 38/161 (24%)
acc-2NP_501567.1 LIC 52..428 CDD:455710 33/144 (23%)
LGIC_ECD_GABAAR 76..258 CDD:349791 27/110 (25%)
Cys-loop 177..191 CDD:349791
Blue background indicates that the domain is not in the aligned region.

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