DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and lgc-49

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_505841.2 Gene:lgc-49 / 179547 WormBaseID:WBGene00010741 Length:457 Species:Caenorhabditis elegans


Alignment Length:438 Identity:123/438 - (28%)
Similarity:203/438 - (46%) Gaps:68/438 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 TEAHMNYTAKPRVV---LPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQ 87
            |:...|.|.:|.::   |......:.|.|::.|.||.|:|  :|..|.|||....||.:|::|::
 Worm    45 TQKPRNCTRQPAIIDKLLNGTGYNKFRIPNENGVPVQVEF--WVQAITSINEITNDFEMDIYINE 107

  Fly    88 RWLESRLEIPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVR 152
            .||:..|:.  |........:::..:|.|..|.|:..|:|||.|||.....|...:.:|.|.||.
 Worm   108 MWLDPALKF--DHLNPCKQNLSVSHQVLEQLWTPNSCFVNSKFAEIHDSPFKNVFLMIYPNGTVW 170

  Fly   153 YAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRWSDSG---VTLNPELKLLQYNLG 214
            ...|::....|.:..:|:|:|||.|.:..|||:.|||:|::||::..   |::..:::|..:.| 
 Worm   171 VNYRVNVKGPCDLSLELFPLDIQECHLIYESFNYNNQEVRMRWNEKSAEPVSVTNKIRLPDFEL- 234

  Fly   215 QPLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRV 279
              :::|.:....|...|.:..|.|...|||:...:.:|.:.|:.|.:.:||.||.||..|:|.|.
 Worm   235 --IKIESTRISAPYPAGMWDELHVKLVFERRYIWYFMQAYLPTYLTIFISWISFSLGTKAMPART 297

  Fly   280 TLLVTCMLTLVTMFTG--ADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRI 342
            .|.|..:|.::..|..  .::|.|:||||:|:||...|..:|.:|.|..:|.......:....:.
 Worm   298 MLGVNALLAMIFQFGNIMRNLPRVSYVKAIDVWMLVSMTFIFLSLLELAIVGYKTKNEEGSKKKC 362

  Fly   343 P--KVL------PMRISNMEKGQCATV----ASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKP 395
            |  |:|      |..:...||.....|    |.| ||.:|.:                       
 Worm   363 PHKKLLDNFEASPAGLCRYEKRFMLPVERRSARW-GGIIRFQ----------------------- 403

  Fly   396 ARRQSLLSVAWTDTDTGVEKIMW--REIDKVSRAVFPILFFVFVLLYW 441
                 :....|.          |  .:||:||..:||..|.:|.::||
 Worm   404 -----VFQDFWN----------WSPEKIDRVSAIMFPACFAIFNIVYW 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 121/436 (28%)
lgc-49NP_505841.2 LIC 53..439 CDD:273305 120/430 (28%)
Neur_chan_LBD 57..264 CDD:280998 65/213 (31%)
Neur_chan_memb 272..436 CDD:280999 51/202 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28810
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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