DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alka and acc-4

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001407497.1 Gene:acc-4 / 176778 WormBaseID:WBGene00012099 Length:409 Species:Caenorhabditis elegans


Alignment Length:410 Identity:102/410 - (24%)
Similarity:169/410 - (41%) Gaps:95/410 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLP------- 112
            |..|:|...|:|.:::.|.....:|.:|:::.:||.:..|.           |..|.|       
 Worm    71 GGHVVVSIEIWVQEVSKIIEITSEFELDIYVTERWTDPSLA-----------YSHLNPCKSNMSV 124

  Fly   113 ---EVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDI 174
               .:....|.|...|:|||:|.|.....|...:.:|.|.::.:..|:.....|....:.:|:|.
 Worm   125 DGATILNKIWNPHACFVNSKLANIHESPFKNIFLQIYSNGSIWHNYRIKLTGPCSSTLRTFPIDQ 189

  Fly   175 QVCPIYIESFSSNNQKVKLRWSDSGVTLNPELKLLQYNLGQP----LELEESDGYMPEKVGNFSR 235
            |.|.::.|||:.|..:||:.|    :|..|.:.:|:.|:..|    ::...|........|.|:.
 Worm   190 QRCMLFYESFTHNTDQVKMEW----ITTVPPITILKGNITLPDYVLVDFSSSSELRLYPPGIFNE 250

  Fly   236 LTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA---D 297
            |...|.|:|..|.:::|.:.|:.:.|.:||.||.||.:.||.|.|:.|..:|.|...| ||   :
 Worm   251 LIATFTFQRLYGFYILQVYVPAYISVFISWVSFTLGAEQIPSRTTVGVNSLLALTFQF-GAVVNN 314

  Fly   298 IPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEKGQCATVA 362
            :|..:.|||:|:|:...|..:||:|.|..||..|....|:                         
 Worm   315 LPKTSDVKAIDVWILSSMAFIFASLIELAVVGYLSRDGQH------------------------- 354

  Fly   363 SWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWTDTDTGVEKIMWREIDKVSRA 427
                |:::.|.:.........|:|                                 :||::|..
 Worm   355 ----GSIKCRCSWLCMNCKDWTAL---------------------------------KIDQMSSI 382

  Fly   428 VFPILFFVFVLLYWPILLMK 447
            |||:.|..|.:.||.|.|.|
 Worm   383 VFPVSFLAFNIWYWFIFLGK 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 97/402 (24%)
acc-4NP_001407497.1 LGIC_ECD_GABAAR 74..259 CDD:349791 48/199 (24%)
Cys-loop 178..192 CDD:349791 4/13 (31%)
LGIC_TM_anion 263..396 CDD:349851 46/195 (24%)
TM1 helix 263..286 CDD:349851 7/22 (32%)
TM2 helix 290..314 CDD:349851 10/24 (42%)
TM3 helix 322..348 CDD:349851 11/25 (44%)
TM4 helix 349..396 CDD:349851 13/108 (12%)

Return to query results.
Submit another query.