DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and lgc-37

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_499662.2 Gene:lgc-37 / 176694 WormBaseID:WBGene00013914 Length:483 Species:Caenorhabditis elegans


Alignment Length:475 Identity:122/475 - (25%)
Similarity:202/475 - (42%) Gaps:117/475 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 MNYTAKPRVVLPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRL 94
            :.||.|....:..|..|..||.:...||:.|:..|.:..:..::.::|:|.:|.:..|:||:.||
 Worm    41 IRYTTKVLDTILLNQDKNFRPVNPDNSPLQVEVDISIRSMGPVSEQNMEFSLDCYFRQKWLDRRL 105

  Fly    95 ----------EIPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNK 149
                      |||            |..::.::.|.||.|..|.:.:.:.|||.......:..:.
 Worm   106 AFTPINPSKPEIP------------LASKMLKDIWIPDTYIRNGRKSYLHTLTVPNILFRVRSDG 158

  Fly   150 TVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRWSDSGVTLNPEL--KLLQYN 212
            .|..:.|:.....|||..:.:|||.|.|||.:.|....::.|..:|.|  |.|:.::  .|.|| 
 Worm   159 QVHVSQRLTIRSRCQMFLKKFPMDTQACPIEVGSLGYFSKDVVYKWKD--VELDAKMGNTLSQY- 220

  Fly   213 LGQPLELEESDGYMPE---KVGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDA 274
              |.|.|.:|:..:.:   ...|.|.|.|||:.:||.|::::|.:.|.:|||::||.|||:..:|
 Worm   221 --QVLSLSKSERNVSDFRFSDRNISVLNVYFKLQRQQGYYILQIYTPCTLVVVMSWVSFWINKEA 283

  Fly   275 IPGRVTLLVTCMLTLVTMFTG--ADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQY 337
            .|.||:|.:..:|::.|:..|  .|:|.|::..|||:::..|.:.:|||:.|:.|:....:.|  
 Worm   284 SPARVSLGIMTVLSMSTIGFGLRTDLPKVSHSTALDVYILTCFVFLFAAMVEYAVINYAQIVY-- 346

  Fly   338 QVNRIPKVLPMRISNMEKGQCATVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKPARRQSLL 402
                |.|                       .:...|..:..|..||....|..|    |||:..:
 Worm   347 ----IRK-----------------------QIHDLKGLEQNTAMGQMFTAGLMG----ARRRDTI 380

  Fly   403 SVAWTDTDTGVEK-------IMW---------------------------------------REI 421
            .|    .|..|||       :.|                                       .:|
 Worm   381 QV----DDLTVEKEEARLKAVPWWKKLCFKDEQGNTSMFYRMAVKAAIAKKTLRNGDPAEVVNKI 441

  Fly   422 DKVSRAVFPILFFVFVLLYW 441
            |..|:..||.|:.:|.:.||
 Worm   442 DNFSKLAFPTLYIIFNVFYW 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 120/473 (25%)
lgc-37NP_499662.2 LIC 44..464 CDD:273305 121/472 (26%)
Neur_chan_LBD 45..254 CDD:280998 60/225 (27%)
Neur_chan_memb 262..461 CDD:280999 54/235 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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