DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and Glra4

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_034427.2 Gene:Glra4 / 14657 MGIID:95750 Length:456 Species:Mus musculus


Alignment Length:424 Identity:144/424 - (33%)
Similarity:217/424 - (51%) Gaps:61/424 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 YVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRL---EIPDDIFEEGD 105
            |...|| |:.||.||.|..:||:....|:....||:||::|:.|:|.:.||   |.|||..:   
Mouse    57 YDARIR-PNFKGPPVNVTCNIFINSFGSVTETTMDYRVNVFLRQQWNDPRLAYREYPDDSLD--- 117

  Fly   106 DYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLY 170
                |.|.:.::.|:||.:|.|.|.|....:|.....:.::||..|.|:.|:..|::|.|:.:.:
Mouse   118 ----LDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPMDLKNF 178

  Fly   171 PMDIQVCPIYIESFSSNNQKVKLRWSDS--GVTLNPELKLLQYNLGQPLELEESDGYMPE--KVG 231
            |||||.|.:.:|||......:...|.:.  .|.:...|.|.|:.|....:|    ||..:  ..|
Mouse   179 PMDIQTCTMQLESFGYTMNDLMFEWLEDAPAVQVAEGLTLPQFILRDEKDL----GYCTKHYNTG 239

  Fly   232 NFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTG- 295
            .|:.:.|.|..|||:|::|||.:.||.|:|:|||.|||:.:||.|.||.|.:|.:||:.|..:| 
Mouse   240 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGS 304

  Fly   296 -ADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEK---- 355
             |.:|.|:||||:|:|||.|:|.|||||.|:..|..:..|:: :..|:.:  ..|...||:    
Mouse   305 RASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHK-EFMRLRR--RQRRQRMEEDIIR 366

  Fly   356 -----------GQCATVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWTDT 409
                       |.|  :.:.:||             |.:.|...:..||.|     ||....|..
Mouse   367 ESRFYFRGYGLGHC--LQARDGG-------------PMEGSSIYSPQPPTP-----LLKEGETMR 411

  Fly   410 DTGVEKIMWREIDKVSRAVFPILFFVFVLLYWPI 443
            ...|::.  :.||.:||||||..|.||.:.||.:
Mouse   412 KLYVDRA--KRIDTISRAVFPFTFLVFNIFYWVV 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 142/420 (34%)
Glra4NP_034427.2 LIC 9..444 CDD:273305 144/424 (34%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O93430 236..241 1/4 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.000

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