DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and Gabrb2

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001334243.1 Gene:Gabrb2 / 14401 MGIID:95620 Length:512 Species:Mus musculus


Alignment Length:482 Identity:131/482 - (27%)
Similarity:214/482 - (44%) Gaps:118/482 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 PSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLE---IPDDIFEEGDDYVTLLP 112
            |...|.||.|..:|.:..|:.::..:||:.:.|:..|.|.:.||.   ||.::        ||..
Mouse    53 PDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNL--------TLDN 109

  Fly   113 EVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVC 177
            .|.:..|.||.||||.|.:.:..:|.|...:.|:.:.||.|..|:....||.|:.:.||:|.|.|
Mouse   110 RVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNC 174

  Fly   178 PIYIESFSSNNQKVKLRW--SDSGVT-----LNPELKLLQYNLGQPLELEESDGYMPEKV----G 231
            .:.|||:......::..|  .|:.||     ..|:..::.|.|            :.:||    |
Mouse   175 TLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKL------------ITKKVVFSTG 227

  Fly   232 NFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFT-- 294
            ::.||::.|:.:|.||:.::||:.||.|:.:|||.|||:..||...||.|.:|.:||:.|:.|  
Mouse   228 SYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHL 292

  Fly   295 GADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKV--------------------------LDV 333
            ...:|.:.||||:|:::.||.:.||.||.|:.:|..                          |||
Mouse   293 RETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAANANNEKMRLDV 357

  Fly   334 -------------QYQYQVNRIPKVLPMR-------------------ISNME-KGQCA------ 359
                         ||:...:....:.|.|                   :|.:| |.:.|      
Mouse   358 NKMFYKDIKQNGTQYRSLWDPTGDLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSEAVM 422

  Fly   360 -------TVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKP--ARRQSLLSVAWTD-TDTGVE 414
                   |:.:::..:::.|||.....:.|:.:|:.:....|.  .||.|.|.:...| ||... 
Mouse   423 GLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNA- 486

  Fly   415 KIMWREIDKVSRAVFPILFFVFVLLYW 441
                  ||:.||..||::|..|.::||
Mouse   487 ------IDRWSRIFFPVVFSFFNIVYW 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 129/480 (27%)
Gabrb2NP_001334243.1 LIC 9..510 CDD:273305 131/482 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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