DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alka and Gabrg1

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_542153.1 Gene:Gabrg1 / 140674 RGDID:621732 Length:465 Species:Rattus norvegicus


Alignment Length:442 Identity:106/442 - (23%)
Similarity:187/442 - (42%) Gaps:101/442 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 YVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYV 108
            |..::||.... .|.:::..::|..|..::..:|::.:|:...|.|.:|||:     |......:
  Rat    75 YDNKLRPDIGV-RPTVIETDVYVNSIGPVDPINMEYTIDIIFAQTWFDSRLK-----FNSTMKVL 133

  Fly   109 TLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMD 173
            .|...:....|.||.:|.||:.::...:|.....:.::.:..|.|..|:.....|.::...:|||
  Rat   134 MLNSNMVGKIWIPDTFFRNSRKSDAHWITTPNRLLRIWSDGRVLYTLRLTINAECYLQLHNFPMD 198

  Fly   174 IQVCPIYIESFSSNNQKVKLRWSDSGVTL-NPEL-KLLQY---NLGQPLELEESDGYMPEKVGNF 233
            ...||:...|:.....:::.:|....|.: :|:. :|.|:   .|....|:..:..      |::
  Rat   199 EHSCPLEFSSYGYPKNEIEYKWKKPSVEVADPKYWRLYQFAFVGLRNSTEISHTIS------GDY 257

  Fly   234 SRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA-- 296
            ..:|::|...|::|:..|||:.|..|.|:|||.|||:..||:|.|.:|.:|.:||:.|:.|.|  
  Rat   258 IIMTIFFDLSRRMGYFTIQTYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARK 322

  Fly   297 DIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPK----------------V 345
            .:|.|:||.|:||:::.|.:.|||||.|:..:.......:.:..|..|                :
  Rat   323 SLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFTSNNKGKTTRDRKLKSKTSVSPGLHAGSTL 387

  Fly   346 LPMRISNMEKGQ------------CAT---------VASWEGGAVRSRKATQTPTTPGQTSLQGN 389
            :||...:|.:|:            |||         ..||..|.:..|.|               
  Rat   388 IPMNNISMPQGEDDYGYQCLEGKDCATFFCCFEDCRTGSWREGRIHIRIA--------------- 437

  Fly   390 GGPPKPARRQSLLSVAWTDTDTGVEKIMWREIDKVSRAVFPILFFVFVLLYW 441
                                          :||..||..||..|.:|.|:||
  Rat   438 ------------------------------KIDSYSRIFFPTAFALFNLVYW 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 104/440 (24%)
Gabrg1NP_542153.1 LIC 66..462 CDD:455710 106/442 (24%)
LGIC_ECD_GABAAR_G 88..269 CDD:349801 38/191 (20%)
Cys-loop 188..202 CDD:349801 4/13 (31%)

Return to query results.
Submit another query.