DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and CHRNB3

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_000740.1 Gene:CHRNB3 / 1142 HGNCID:1963 Length:458 Species:Homo sapiens


Alignment Length:454 Identity:91/454 - (20%)
Similarity:168/454 - (37%) Gaps:92/454 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 YVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLE-IPDDIFEEGDDY 107
            |.|.:||.......:.|.|.:.:..:..::.::.....::::.|.|.:.:|. .|||.   |..:
Human    40 YQKWVRPVLHSNDTIKVYFGLKISQLVDVDEKNQLMTTNVWLKQEWTDHKLRWNPDDY---GGIH 101

  Fly   108 VTLLPEVFENFWQPD-PYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYP 171
            ...:|.  |:.|.|| ..|.|:......:|   .|.|.:..|.||.:........:|.|:...:|
Human   102 SIKVPS--ESLWLPDIVLFENADGRFEGSL---MTKVIVKSNGTVVWTPPASYKSSCTMDVTFFP 161

  Fly   172 MDIQVCPIYIESFSSNNQKVKLRWSDSGVTLNPELKLLQYNLGQP----------LELEESDGYM 226
            .|.|.|.:   .|.|        |:..|..:  :|.|:..|:.:.          |..:...|..
Human   162 FDRQNCSM---KFGS--------WTYDGTMV--DLILINENVDRKDFFDNGEWEILNAKGMKGNR 213

  Fly   227 PEKVGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVT 291
            .:.|.::..:|..|...|....:.:....|...:..|:...|:|..|  .|....|.|.:|..:|
Human   214 RDGVYSYPFITYSFVLRRLPLFYTLFLIIPCLGLSFLTVLVFYLPSD--EGEKLSLSTSVLVSLT 276

  Fly   292 MF---------TGADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQ--------- 338
            :|         :.:.:.|:.....|       .:.:|..|:..|.|.|::|.::..         
Human   277 VFLLVIEEIIPSSSKVIPLIGEYLL-------FIMIFVTLSIIVTVFVINVHHRSSSTYHPMAPW 334

  Fly   339 -----VNRIPKVLPM-----RISNMEKGQCATVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPP 393
                 :.::||:|.|     |.|:.||.:...|..   |.|..:| .|...:.|:..|..     
Human   335 VKRLFLQKLPKLLCMKDHVDRYSSPEKEESQPVVK---GKVLEKK-KQKQLSDGEKVLVA----- 390

  Fly   394 KPARRQSLLSVAWTDTDTGVEKIM------WREIDKVSRAVFPILFFVF-----VLLYWPILLM 446
              ...::..|:.:.......|..:      |:.:.:|...:|..||.:.     ||::.|.|.|
Human   391 --FLEKAADSIRYISRHVKKEHFISQVVQDWKFVAQVLDRIFLWLFLIVSVTGSVLIFTPALKM 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 88/447 (20%)
CHRNB3NP_000740.1 LIC 23..449 CDD:455710 88/449 (20%)

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