Protein Alignment CG12344 and gabra3

DIOPT Version :9

• Sequence 1: NP_001286298.1
• Gene: CG12344 / 36145
• FlyBaseID: FBgn0033558
• Length: 449
• Species: Drosophila melanogaster
• Sequence 2: XP_002939243.2
• Gene: gabra3 / 100494398
• XenbaseID: XB-GENE-992774
• Length: 538
• Species: Xenopus tropicalis
• Alignment Length: 457
• Identity: 125/457 - (27%)
• Similarity: 197/457 - (43%)
• Gaps: 79/457 - (17%)

  Fly    31 NYTAKPRVV--LPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESR 93
            |.|...|::  |...|...:| |....|...|...|:|.....::..||::.:|:|..|.||:.|
 Frog   115 NITIFTRILDRLLDGYDNRLR-PGLGDSVTEVKTDIYVTSFGPVSDTDMEYTIDVFFRQSWLDER 178

  Fly    94 LEIPDDIFEEGDDYVTLLP---EVFENFWQPDPYFLNSKIAEIATLTHKFTS----VTLYKNKTV 151
            |:.        |..:..||   .:....|.||.:|.|.|    .::.|..|:    :.|..|.|:
 Frog   179 LKF--------DGPIRTLPLNNLLASKIWTPDTFFHNGK----KSVAHNMTTPNKLLRLIDNGTL 231

  Fly   152 RYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRW---SDSGVTLNPE-LKLLQYN 212
            .|..|:.....|.|..:.:|||:..||:...|::....:|...|   |:..|.:.|: .:|.||:
 Frog   232 LYTMRLTIHAECTMHLEDFPMDVHACPLKFGSYAYPKTEVVYSWTNGSNKSVAVAPDGSRLNQYD 296

  Fly   213 LGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPG 277
            |   |.:......:....|.:..:|.:|..:|:||:.:|||:.|..:.|:||..||||..:::|.
 Frog   297 L---LGVAVGTETIRSSTGEYIVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPA 358

  Fly   278 RVTLLVTCMLTLVTMFTGA--DIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVL-------DV 333
            |....||.:||:.|:...|  .:|.|||..|:|.:||.|...||:||.||..|...       |.
 Frog   359 RTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFMAVCYAFVFSALIEFATVNYFTKRGWAWDG 423

  Fly   334 QYQYQVNRIPKVLPMRIS----------------NMEKGQCATVASWEGGAVRSRKATQTPTTPG 382
            :...:.....|..|:.::                |:::...||:|        ...|.|.|.
 Frog   424 KRGQEGQDFKKKEPIILAKKSNTTYNIVGTTYTLNIKEPALATIA--------KSAALQPPP--- 477

  Fly   383 QTSLQGNGGPPKPARRQSLLSVAWTDTDTGVEKIMWREIDKVSRAVFPILFFVFVLLYWPILLMK 447
                     ||...|......:....|...|.:     |||:||.|||:||.:|.|:||...:.:
 Frog   478 ---------PPLSPRHLEHKPMECKKTYNSVSR-----IDKISRIVFPVLFAIFNLVYWATYVNR 528

  Fly   448 SS 449
            .|
 Frog   529 ES 530

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12344	NP_001286298.1	LIC	8..441	CDD:273305	122/447 (27%)
gabra3	XP_002939243.2	LIC	121..525	CDD:273305	122/444 (27%)
		LGIC_ECD_GABAAR_A3	127..326	CDD:349837	53/214 (25%)
		Cys-loop	243..257	CDD:349837	5/13 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1057372at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010