DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and gabrb1

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_002664179.2 Gene:gabrb1 / 100331377 ZFINID:ZDB-GENE-090313-230 Length:484 Species:Danio rerio


Alignment Length:494 Identity:139/494 - (28%)
Similarity:228/494 - (46%) Gaps:101/494 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LGFILMWLSEATEAHMNYTAKPRVVLPPN--YVK----------EIR-PPSKKGSPVIVDFSIFV 66
            |..:.:.|..:..||       .|..|.|  |||          :|| .|...|.||.|..||.:
Zfish    20 LVLVALTLGRSPPAH-------SVNEPSNMSYVKVTVDKLLKGYDIRLRPDFGGPPVDVGMSIDI 77

  Fly    67 VDINSINVEDMDFRVDMFIHQRWLESRLE---IPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNS 128
            ..|:.::..:||:.:.|:..|.|.:.||.   ||.::        ||...|.:..|.||.||:|.
Zfish    78 SSIDMVSEVNMDYTITMYFQQSWRDKRLSYTGIPLNL--------TLDNRVADQLWVPDTYFIND 134

  Fly   129 KIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKL 193
            |.:.:..:|.|...:.|:.:.||.|..|:....||.|:.:.||:|.|.|.:.|||:......::.
Zfish   135 KKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEF 199

  Fly   194 RW-SDSGVTLNPELKLLQYNLGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTFAPS 257
            .| ..|.||....::|.|:::   ::.:.....:....|::.||::.|:.:|.||:.::||:.||
Zfish   200 YWQGGSSVTGVDNIELPQFSI---IDYKTLSKKVVFATGSYPRLSLSFKLKRNIGYFILQTYMPS 261

  Fly   258 SLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFT--GADIPPVAYVKALDLWMAGCMLSVFA 320
            :|:.:|||.|||:..||...||.|.:|.:||:.|:.|  ...:|.:.||||:|:::.||.:.||.
Zfish   262 TLITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDIYLMGCFVFVFL 326

  Fly   321 ALAEFVVVKVL--------------------DVQYQYQVNR--------IPKV-LPMRISNMEK- 355
            ||.|:..|..:                    :.:.:.:.|:        ||.. |.:|:|..|. 
Zfish   327 ALLEYAFVNYIFFGRGPHLQKKVAEKAAKSNNEKSRLESNKVQVDVHGSIPLTNLDLRLSGAEML 391

  Fly   356 GQCA----TVASWEGGAVRSRK-------------ATQTPTTPGQTSLQGNGGPPKPARRQSLLS 403
            |...    |:.|::..:::.||             :.:.|..|.::.|:         ||.:.|.
Zfish   392 GALGDPRNTMFSYDSASIQYRKPLTGRDLYGRPTASIERPLAPKKSRLR---------RRAAQLK 447

  Fly   404 VAWTD-TDTGVEKIMWREIDKVSRAVFPILFFVFVLLYW 441
            |...| ||...       |||.||.:|||.:..|.|:||
Zfish   448 VKIPDLTDVNA-------IDKWSRVIFPITYTFFNLVYW 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 137/492 (28%)
gabrb1XP_002664179.2 LIC 19..482 CDD:273305 139/494 (28%)
Neur_chan_LBD 49..250 CDD:280998 58/211 (27%)
Neur_chan_memb 257..479 CDD:280999 66/237 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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