DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and gabra2

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_002933509.2 Gene:gabra2 / 100170583 XenbaseID:XB-GENE-1000398 Length:451 Species:Xenopus tropicalis


Alignment Length:461 Identity:126/461 - (27%)
Similarity:206/461 - (44%) Gaps:73/461 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ILMWLSEA--------TEAHMNYTAKPRVV--LPPNYVKEIRPPSKKGSPVI-VDFSIFVVDINS 71
            :::|.|.:        .:|..|.|...|::  |...|...:||  ..|..|. |...|:|.....
 Frog    18 LVLWESSSQVLGDTVDNDAKNNITIFTRILDRLLDGYDNRLRP--GLGDRVTEVHTDIYVTSFGP 80

  Fly    72 INVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVFEN-FWQPDPYFLNSK--IAEI 133
            ::..||::.:|:|..|.|.:.||..      :|..::..|..:..| .|.||.:|.|.|  ||..
 Frog    81 VSDTDMEYTIDVFFRQNWQDERLRF------KGPMHILRLNNLMANKIWTPDTFFHNGKKSIAHN 139

  Fly   134 ATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRW--- 195
            .|:.:|.  :.:..:.|:.|..|:.....|.|..:.:|||...||:...|::....:|...|   
 Frog   140 MTMPNKL--LRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHACPLKFGSYAYTTSEVTYVWTRN 202

  Fly   196 SDSGVTLNPE-LKLLQYNLGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTFAPSSL 259
            :...|.:.|: .:|.||.|...|..:|:   :....|.::.:|.:|..:|:||:.:|||:.|..:
 Frog   203 ATESVVVAPDGSRLNQYVLLGHLVGKET---IKSSTGEYTVMTTHFHLKRKIGYFVIQTYLPCIM 264

  Fly   260 VVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--DIPPVAYVKALDLWMAGCMLSVFAAL 322
            .|:||..||||..:::|.|....||.:||:.|:...|  .:|.|||..|:|.::|.|...||:||
 Frog   265 TVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSAL 329

  Fly   323 AEFVVV-------------KVLDVQYQYQVNRIPKVLPMRISNMEKGQCATVASWEGGAVRSRKA 374
            .||..|             .|::.:.:.:.:.|.|         .......||::   |....|.
 Frog   330 IEFATVNYFTKRGWAWDGKSVVNDKKKEKASVIKK---------NNAYAVAVANY---APNITKD 382

  Fly   375 TQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWTDTDTGVEKIMWREIDKVSRAVFPILFFVFVLL 439
            :..||.....:...|...|:.|::          |...|.|     ||::||.|||:||..|.|:
 Frog   383 SALPTISKSATADPNKAKPQEAKK----------TFNSVSK-----IDRMSRIVFPLLFGTFNLV 432

  Fly   440 YWPILL 445
            ||...|
 Frog   433 YWATYL 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 123/455 (27%)
gabra2XP_002933509.2 LIC 12..437 CDD:273305 125/458 (27%)
LGIC_ECD_GABAAR_A2 48..250 CDD:349836 54/214 (25%)
Cys-loop 167..181 CDD:349836 5/13 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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