DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and gabrb3

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001096164.1 Gene:gabrb3 / 100124708 XenbaseID:XB-GENE-6030743 Length:475 Species:Xenopus tropicalis


Alignment Length:460 Identity:137/460 - (29%)
Similarity:217/460 - (47%) Gaps:85/460 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 NYVKE----------IR-PPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLE- 95
            ::|||          || .|...||||.|..:|.:..|:.::..:||:.:.|:..|.|.:.||. 
 Frog    35 SFVKETVDKLLKGYDIRLRPDFGGSPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAY 99

  Fly    96 --IPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMH 158
              ||.::        ||...|.:..|.||.||||.|.:.:..:|.|...:.|:.:.||.|..|:.
 Frog   100 TGIPLNL--------TLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRIT 156

  Fly   159 AIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRW--SDSGVTLNPELKLLQYNLGQPLELEE 221
            ...||.|:.:.||:|.|.|.:.|||:......::..|  .|:.||....::|.|:::        
 Frog   157 TTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWLGGDNAVTGVERIELPQFSI-------- 213

  Fly   222 SDGYMPEK-----VGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTL 281
            .|..:..|     .|::.||::.|:.:|.||:.::||:.||.|:.:|||.|||:..||...||.|
 Frog   214 MDHKLVSKNVVFATGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVAL 278

  Fly   282 LVTCMLTLVTMFT--GADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVL----DVQYQ---- 336
            .:|.:||:.|:.|  ...:|.:.||||:|:::.||.:.||.||.|:..|..:    ..|.|    
 Frog   279 GITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLA 343

  Fly   337 ------------YQVNRIPK-----VLPMRISNMEKGQCATVA---------SWEGGAVRSRKAT 375
                        ::.||:..     :..:.|.|...|...|.:         |::...::.||.:
 Frog   344 EKSAKSNKDHSKFESNRVDAHGNILLTTLEIHNEVTGNEITTSVSDARNSATSFDNSGIQYRKQS 408

  Fly   376 QTPTTPGQTSLQGNGGPPKPA---RRQSLLSVAWTD-TDTGVEKIMWREIDKVSRAVFPILFFVF 436
            ....:.|:.:...| .|||..   ||.|.|.:...| ||...       ||:.||.||||.|.:|
 Frog   409 TARDSLGRRTADRN-HPPKKTHLRRRSSQLKIKIPDLTDVNA-------IDRWSRIVFPITFSLF 465

  Fly   437 VLLYW 441
            .|:||
 Frog   466 NLIYW 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 135/458 (29%)
gabrb3NP_001096164.1 LIC 11..473 CDD:273305 137/460 (30%)
Neur_chan_LBD 41..243 CDD:280998 61/217 (28%)
Neur_chan_memb 250..470 CDD:280999 68/227 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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