DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsm10 and Lsm10

DIOPT Version :10

Sequence 1:NP_610615.1 Gene:Lsm10 / 36141 FlyBaseID:FBgn0033554 Length:141 Species:Drosophila melanogaster
Sequence 2:NP_001102446.1 Gene:Lsm10 / 366468 RGDID:1584914 Length:122 Species:Rattus norvegicus


Alignment Length:122 Identity:39/122 - (31%)
Similarity:57/122 - (46%) Gaps:12/122 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SAREKYLVSNTLNCWPVMLQGHSVLIDLHNETSVAGIIDVADGHMTCELTHAVFIDRNGGQHPFD 69
            |.:|:.:..|:|......|||....:||.:|:...|.||..|..|...|.:..:.||.|.|...|
  Rat     6 SVKERTISENSLIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELD 70

  Fly    70 HFMVRNRMIRQIHIPSYLD----AEQELRSAMERGVLRRKR-VETKG-GKRTFKQKR 120
            ...|..|.:|.:|||..::    .||:|:      ::.|.| ...|| |:|.|..||
  Rat    71 DLFVTGRNVRYVHIPDGVNITATIEQQLQ------IIHRVRNFGGKGQGRREFPSKR 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsm10NP_610615.1 LSm10 7..84 CDD:212480 24/76 (32%)
Lsm10NP_001102446.1 LSm10 8..85 CDD:212480 24/76 (32%)

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