Protein Alignment Amfr and SPBC2A9.04c

DIOPT Version :9

• Sequence 1: XP_038954087.1
• Gene: Amfr / 361367
• RGDID: 1311551
• Length: 643
• Species: Rattus norvegicus
• Sequence 2: NP_596213.1
• Gene: SPBC2A9.04c / 2540480
• PomBaseID: SPBC2A9.04c
• Length: 741
• Species: Schizosaccharomyces pombe
• Alignment Length: 318
• Identity: 71/318 - (22%)
• Similarity: 108/318 - (33%)
• Gaps: 96/318 - (30%)

  Rat   336 VNNDD-----CAICWDSM-----QAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMS--------- 381
            ::||.     |.||:|.|     :.|.|:||||:|..:||:.|||...:||.||..
pombe    97 LSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVPHETVGSA 161

  Rat   382 ----LNIADGSRAREDHQGENLDENLVPVAAAEGRPRLNQHNHFFHFDGSRIASWLPSFSVEVMH 442
                |.|...|.....:||.        .|.::.......|:.|.           ||..:...:
pombe   162 HPPILFIIPHSHTLRGNQGN--------TAVSQENASNGVHSDFH-----------PSEELNNAN 207

  Rat   443 TTNILGITQASNSQLNAMAHQIQEMFPQVPYHLVLQDLQMTRSVEITTDNILEGRIQVPFPVQRS 507
            |....|:.:.:. ||:.:|      |.::.:.|.     ..||...|             ||:.:
pombe   208 TDGRTGVDEPAR-QLHRIA------FNRIRFILA-----PNRSATNT-------------PVENT 247

  Rat   508 DSLRPALNS--------PVERPGTDLEEGEASVQTERVPLDLSPRLEETLDFSEVELEPVEVEDF 564
            ....|..|:        |:...|..::...||.:.|..|.|..|....:|              |
pombe   248 HPENPDSNTSTPTTRSEPLAGEGASIDAENASSRQETTPSDSRPSTLTSL--------------F 298

  Rat   565 EARGSRFSKSADERQRMLVQRKDDLLQQARKRFLNKSSEDDGASERLLPSEGTSSDPV 622
            .|    |..|..:|.........:|...:.. ..|.:|.|...|.  |||:...:.||
pombe   299 NA----FFSSMPDRPSSNEPMTSNLTSNSGS-MTNSTSTDLPTSN--LPSQNAPARPV 349

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Amfr	XP_038954087.1	HRD1	86..>382	CDD:227568	23/68 (34%)
		RING-H2_AMFR	339..382	CDD:319369	22/65 (34%)
		CUE_AMFR	458..498	CDD:270604	6/39 (15%)
		G2BR	575..600	CDD:375868	2/24 (8%)
SPBC2A9.04c	NP_596213.1	zf-RING_2	106..150	CDD:290367	19/43 (44%)
		TFIIA	348..>609	CDD:281188	2/2 (100%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910