DRSC/TRiP Functional Genomics Resources

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Protein Alignment mms4 and MMS4

DIOPT Version :9

Sequence 1:NP_610611.1 Gene:mms4 / 36136 FlyBaseID:FBgn0033549 Length:309 Species:Drosophila melanogaster
Sequence 2:NP_009656.2 Gene:MMS4 / 852395 SGDID:S000000302 Length:691 Species:Saccharomyces cerevisiae


Alignment Length:255 Identity:52/255 - (20%)
Similarity:96/255 - (37%) Gaps:82/255 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 GQQTIALGSSPTGLDEA-WKSENQ-----VVQWLS---ESSFQRAVKDQSLVCLGPRLQD----- 125
            |:..|.:.|....|..| ::.||:     |.|.||   |:...|:.|...:..||.:..|     
Yeast   498 GKHVILILSDINKLKRAIFQLENEKYKARVEQRLSGTEEALRPRSKKSSQVGKLGIKKFDLEQRL 562

  Fly   126 SFPDCQYTIALPTLRHSKHGSSSSQDALIEMQLLQELHVEQLDQPESQDLVALLQRYTKAIAEAP 190
            .|.|.::.:.:.|:  :.|           |:.:..|          .:||:|:           
Yeast   563 RFIDREWHVKIHTV--NSH-----------MEFINSL----------PNLVSLI----------- 593

  Fly   191 YKKQRNETLGGFKKYL------ANDKKQCVRVDQGNGYGRLWQQHLNRLPMVTLEVAESIIAQYP 249
             .|||.:....:.||.      |.|..:.::        :.:.| :.|:|.:.   |.::::.||
Yeast   594 -GKQRMDPAIRYMKYAHLNVKSAQDSTETLK--------KTFHQ-IGRMPEMK---ANNVVSLYP 645

  Fly   250 CPKKLIDHFSSDPLAVQSLADLKIKRCNGPQPLHTERRIGNVLSNKLYTLYTAKDPNTLI 309
            ..:.|::.....          :::..|..:.|.||     .:..:||.|:|..|||..|
Yeast   646 SFQSLLEDIEKG----------RLQSDNEGKYLMTE-----AVEKRLYKLFTCTDPNDTI 690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mms4NP_610611.1 ERCC4 48..179 CDD:280828 25/117 (21%)
MMS4NP_009656.2 XPF_nuclease_EME-like 397..599 CDD:410856 29/135 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105221
Panther 1 1.100 - - LDO PTHR21077
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.000

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