DRSC/TRiP Functional Genomics Resources

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Protein Alignment mms4 and eme2

DIOPT Version :9

Sequence 1:NP_610611.1 Gene:mms4 / 36136 FlyBaseID:FBgn0033549 Length:309 Species:Drosophila melanogaster
Sequence 2:NP_001072860.1 Gene:eme2 / 780321 XenbaseID:XB-GENE-5926460 Length:503 Species:Xenopus tropicalis


Alignment Length:387 Identity:82/387 - (21%)
Similarity:150/387 - (38%) Gaps:99/387 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KVDKLHKQALREQQ---KRIKPGECMKYVRMVIDAGFLGIPVGQEALQQLNATGLKYEIRSLPVS 65
            :::|:.::..:|..   |.::|.:|.||:.:.:|||.|.....::.|:.|......|.|....|.
 Frog   131 ELEKIERERRKETNLALKLLRPDQCGKYMVVKVDAGLLEDAGSEDVLEALRVAEYNYSIEPHSVP 195

  Fly    66 HCILWERNVGQQTIALGSSPTGLDEAWKSENQVVQWLSESSFQRAVKDQS----LVCLGPRLQD- 125
            ..|.|.|.:......:    .|:|...:.|:|::..:...|:..:|:..:    ..|:|..::: 
 Frog   196 QSISWRREMPADWTCI----EGMDMKEEEEDQLLVLVEPKSYLSSVRTYAQAPYYFCVGNEMEEI 256

  Fly   126 ---------SFPDCQYTIALPTL-----------------------RHSKHGSSSS-------QD 151
                     ..|..:.|:.:..|                       |.|....|::       |:
 Frog   257 PGSVFSIPAKNPHKKVTLVIIGLQEYRWCERLSRQIQRQSLDAAEGRDSNKDQSATRATRQQIQE 321

  Fly   152 ALIEMQLLQELHVEQLD--QPESQDLVALLQRYTKAIAEAPYKKQRNETLGGFKKYLANDKKQCV 214
            ||:.:||.....|..||  :...|.:.|:    ||:||:.|::|........|          |.
 Frog   322 ALVFLQLHYNTEVLCLDTWKELGQHVCAV----TKSIAQRPFRKHWEAQTFSF----------CT 372

  Fly   215 RVDQGNGYG---------RLWQQHLNRLPMVTLEVAESIIAQYPCPKKLIDHFS---SDPLAVQS 267
            ......|:|         ..|::.:.:|..|:..:|..:...||.|:.|:..:|   ||...:..
 Frog   373 SAGSWRGWGPRGVLTGLPLTWRRQIQQLNRVSPAMAAVVSQAYPSPQLLMQAYSACGSDRERMSL 437

  Fly   268 LADLKIKRCN--------------------GPQPLHTERRIGNVLSNKLYTLYTAKDPNTLI 309
            |.||:|.:.|                    |.|....|||||..||.:::.|.|:|:|..::
 Frog   438 LTDLRIPQDNNTGVTQKAEDPREVADIAQEGDQVPGRERRIGPDLSRRIWLLMTSKNPELVL 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mms4NP_610611.1 ERCC4 48..179 CDD:280828 31/176 (18%)
eme2NP_001072860.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..135 0/3 (0%)
PTZ00121 <37..>224 CDD:173412 22/96 (23%)
DUF1682 <99..140 CDD:369610 1/8 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I5206
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1595761at2759
OrthoFinder 1 1.000 - - FOG0004634
OrthoInspector 1 1.000 - - otm47590
Panther 1 1.100 - - LDO PTHR21077
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.070

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