DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab3 and rab12

DIOPT Version :10

Sequence 1:NP_523687.1 Gene:Rab3 / 36127 FlyBaseID:FBgn0005586 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001018466.1 Gene:rab12 / 553657 ZFINID:ZDB-GENE-050522-555 Length:235 Species:Danio rerio


Alignment Length:191 Identity:86/191 - (45%)
Similarity:128/191 - (67%) Gaps:6/191 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ASGGDP-----KWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK 61
            |.||.|     :.::....:..||..:::|||:..|||||.:.|:.||:|..|..||||:|||:|
Zfish    11 AGGGSPAVGASQRRRKIPPRAADYKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIK 75

  Fly    62 TVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDN 126
            ||....|:::|||||||||||:.:||:||||||.|.:|:||:|.:::|..:..|:..|..|:.::
Zfish    76 TVELRGKKIRLQIWDTAGQERFNSITSAYYRGAKGIVLVYDITKQETFEDLPKWMKMIDKYASED 140

  Fly   127 AQVILVGNKCDMEDQRVISFERGRQLADQL-GVEFFETSAKENVNVKAVFERLVDIICDKM 186
            |:::|||||.|.|..|.||.::..:.|.:: |:.|.|.|||:|.||..:|.:|||.|..||
Zfish   141 AELLLVGNKLDCESDRAISRQQAERFASRISGMRFCEASAKDNFNVDEIFLKLVDDILSKM 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab3NP_523687.1 Rab3 21..185 CDD:206657 78/164 (48%)
rab12NP_001018466.1 Rab12 36..235 CDD:206699 80/166 (48%)

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