DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab3 and Rab18

DIOPT Version :10

Sequence 1:NP_523687.1 Gene:Rab3 / 36127 FlyBaseID:FBgn0005586 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster


Alignment Length:165 Identity:67/165 - (40%)
Similarity:105/165 - (63%) Gaps:3/165 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERY 83
            |...|||:||.|.|||:|.:.|:.::.|......|:|:|||.|.:.......|:.:|||||.||:
  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERF 67

  Fly    84 RTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWD-NAQVILVGNKCDMEDQRVISFE 147
            |::|.::||.|:|.||:||:|:.||...::.|:.::.:||.: |..:|:||||.|  ::||:..|
  Fly    68 RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDRE 130

  Fly   148 RGRQLADQLGVEFFETSAKENVNVKAVFERLVDII 182
            .||:.|.:....|.|||||.:..|..||:.:|:.|
  Fly   131 EGRKFARKHRALFIETSAKCDQFVSDVFKDVVEKI 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab3NP_523687.1 Rab3 21..185 CDD:206657 66/163 (40%)
Rab18NP_524744.2 Rab18 6..165 CDD:206656 65/160 (41%)

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