DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab3 and RAB8A

DIOPT Version :10

Sequence 1:NP_523687.1 Gene:Rab3 / 36127 FlyBaseID:FBgn0005586 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_005361.2 Gene:RAB8A / 4218 HGNCID:7007 Length:207 Species:Homo sapiens


Alignment Length:196 Identity:98/196 - (50%)
Similarity:145/196 - (73%) Gaps:2/196 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
            :.:||:||||:||:|.||||..|||:::|:|.|.|:||:|||||::|:....||:||||||||||
Human     3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67

  Fly    81 ERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVIS 145
            ||:|||||||||||||.:|:||:|||.||:::::|:..|:.::..:.:.:::|||||:.|:|.:|
Human    68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS 132

  Fly   146 FERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGGQKGQRLTDQP 210
            .|||.:||...|::|.|||||.|:||:..|..|...|..||.:.|:.:..  .|..:|.::|...
Human   133 KERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSP--QGSNQGVKITPDQ 195

  Fly   211 Q 211
            |
Human   196 Q 196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab3NP_523687.1 Rab3 21..185 CDD:206657 89/163 (55%)
RAB8ANP_005361.2 Rab8_Rab10_Rab13_like 6..172 CDD:206659 91/165 (55%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 8/13 (62%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 15/16 (94%)

Return to query results.
Submit another query.