DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab3 and rab1bb

DIOPT Version :9

Sequence 1:NP_001356961.1 Gene:Rab3 / 36127 FlyBaseID:FBgn0005586 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001002129.2 Gene:rab1bb / 415219 ZFINID:ZDB-GENE-040625-133 Length:201 Species:Danio rerio


Alignment Length:185 Identity:88/185 - (47%)
Similarity:133/185 - (71%) Gaps:6/185 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
            :||:||||:||:|.|||:..|.|:|||::|.:|:||:|:|||::|:....|.:||||||||||||
Zfish     5 YDYLFKLLLIGDSGVGKSCILLRFADDTYTESFISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69

  Fly    83 YRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFE 147
            :||||::|||||.|.|::||||:::|:|:|:.|:.:|..|:.:|...:|||||||:..::|:.:.
Zfish    70 FRTITSSYYRGAHGIIVVYDVTDQESYNNVKQWLKEIDRYASENVNKLLVGNKCDLTTKKVVDYT 134

  Fly   148 RGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGGQK 202
            ..::.||.||:.|.|||||...||:..|..:.:.|..:|.      |...||.:|
Zfish   135 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAEEIKKRMR------PGASGGSEK 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab3NP_001356961.1 Rab3 21..185 CDD:206657 81/163 (50%)
rab1bbNP_001002129.2 Rab1_Ypt1 7..172 CDD:206661 82/164 (50%)
RAB 9..172 CDD:197555 81/162 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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