DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab3 and rab13

DIOPT Version :10

Sequence 1:NP_523687.1 Gene:Rab3 / 36127 FlyBaseID:FBgn0005586 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_958486.1 Gene:rab13 / 373105 ZFINID:ZDB-GENE-030826-30 Length:200 Species:Danio rerio


Alignment Length:168 Identity:90/168 - (53%)
Similarity:129/168 - (76%) Gaps:1/168 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
            :.:|::||||:||:|.||||..:.|:|:|:|.|.::||:||||||||:....|:||||:||||||
Zfish     3 KKYDFLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKVKTIEVEGKKVKLQVWDTAGQ 67

  Fly    81 ERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVIS 145
            ||::||||||||||||.||:||:|:|.|:.::|:|:..||..:......:|:|||||:|.:|.:|
Zfish    68 ERFKTITTAYYRGAMGIILVYDITDEKSYENIQNWMKSIKENASAGVSRMLLGNKCDIEAKRKVS 132

  Fly   146 FERGRQLADQLGVEFFETSAKENVNVKAVFERLV-DII 182
            .|.|.:||.:.|:.|||||||.::||:..|..|. ||:
Zfish   133 KETGEKLAKEHGIRFFETSAKSSINVEESFTSLARDIL 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab3NP_523687.1 Rab3 21..185 CDD:206657 89/163 (55%)
rab13NP_958486.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 90/165 (55%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 7/13 (54%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 14/16 (88%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..195
Blue background indicates that the domain is not in the aligned region.

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