DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab3 and RabX2

DIOPT Version :9

Sequence 1:NP_001356961.1 Gene:Rab3 / 36127 FlyBaseID:FBgn0005586 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster


Alignment Length:166 Identity:66/166 - (39%)
Similarity:107/166 - (64%) Gaps:1/166 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQE 81
            :|||:||:|::|:|.|||:..|.|::||.||..::.|:|||.|.::|....:.:.||:|||:|.:
  Fly     3 HFDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDK 67

  Fly    82 RYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISF 146
            |:.::..:.||.|.|.:|:||:|:..||.::..|:.:|:....|...|:|||||.|..:.|.:|.
  Fly    68 RFNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSM 132

  Fly   147 ERGRQLADQLGVEFFETSAKENVNVKAVFERL-VDI 181
            |:|...|.:..:.|.|.|||..:||..:|..| :||
  Fly   133 EQGFNYAHRGALGFEEVSAKSGMNVYDIFSSLAMDI 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab3NP_001356961.1 Rab3 21..185 CDD:206657 63/162 (39%)
RabX2NP_572627.1 RAB 8..171 CDD:197555 63/161 (39%)
Rab 8..165 CDD:206640 60/156 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454253
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR47980
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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