DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab3 and Rab23

DIOPT Version :10

Sequence 1:NP_523687.1 Gene:Rab3 / 36127 FlyBaseID:FBgn0005586 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_033025.2 Gene:Rab23 / 19335 MGIID:99833 Length:237 Species:Mus musculus


Alignment Length:180 Identity:63/180 - (35%)
Similarity:104/180 - (57%) Gaps:1/180 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAG 79
            :::.:...|::::||.:|||:|.:.||....||..:..|:|:||..:.:..:|:.|:|.:|||||
Mouse     3 EEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 67

  Fly    80 QERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVI 144
            ||.:..||.||||||...:|::..|:.:||.::..|..::.....| ....||.||.|:.|...|
Mouse    68 QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDDSCI 131

  Fly   145 SFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADP 194
            ..|....||.:|.:.|:.||.||::||..||:.|.:....|:.:.:..||
Mouse   132 KNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQKLKQQITEDP 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab3NP_523687.1 Rab3 21..185 CDD:206657 60/163 (37%)
Rab23NP_033025.2 Rab23_like 10..169 CDD:133306 60/159 (38%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P20340 28..46 6/17 (35%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P20340 65..84 13/18 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 204..237
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.