DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab3 and rab-3

DIOPT Version :9

Sequence 1:NP_001356961.1 Gene:Rab3 / 36127 FlyBaseID:FBgn0005586 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001021973.1 Gene:rab-3 / 173971 WormBaseID:WBGene00004267 Length:233 Species:Caenorhabditis elegans


Alignment Length:222 Identity:175/222 - (78%)
Similarity:191/222 - (86%) Gaps:5/222 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASGGDPKWQKDA-ADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVF 64
            ||:||.|:..... .|||||||||||||||||||||||||||.||||||||||||||||||||||
 Worm    15 MAAGGQPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVF 79

  Fly    65 RHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQV 129
            |.||||||||||||||||||||||||||||||||||||:|||:||||||||.||||||||:||||
 Worm    80 RGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQV 144

  Fly   130 ILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADP 194
            :||||||||:.:||:|.:||||||||||:||||||||||:|||||||:||:||||||:||||.||
 Worm   145 VLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLDKDP 209

  Fly   195 TLVGGGQKGQRLTDQPQGTP-NANCNC 220
            .   ...|||:|...|...| ...|||
 Worm   210 Q---QQPKGQKLEANPTQKPAQQQCNC 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab3NP_001356961.1 Rab3 21..185 CDD:206657 146/163 (90%)
rab-3NP_001021973.1 Rab3 36..200 CDD:206657 146/163 (90%)
RAB 37..197 CDD:197555 142/159 (89%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167902
Domainoid 1 1.000 297 1.000 Domainoid score I794
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H23420
Inparanoid 1 1.050 349 1.000 Inparanoid score I1346
Isobase 1 0.950 - 0 Normalized mean entropy S282
OMA 1 1.010 - - QHG53521
OrthoDB 1 1.010 - - D1218073at2759
OrthoFinder 1 1.000 - - FOG0000908
OrthoInspector 1 1.000 - - oto17603
orthoMCL 1 0.900 - - OOG6_105135
Panther 1 1.100 - - LDO PTHR47980
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2742
SonicParanoid 1 1.000 - - X578
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.890

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