DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab3 and zgc:171927

DIOPT Version :9

Sequence 1:NP_001356961.1 Gene:Rab3 / 36127 FlyBaseID:FBgn0005586 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001096112.1 Gene:zgc:171927 / 100124616 ZFINID:ZDB-GENE-070822-21 Length:210 Species:Danio rerio


Alignment Length:182 Identity:82/182 - (45%)
Similarity:128/182 - (70%) Gaps:1/182 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQER 82
            :||:||||:||:|.|||:..|.|:|||::|.:::||:|:|||::|:....|.|||||||||||||
Zfish     5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEMEGKTVKLQIWDTAGQER 69

  Fly    83 YRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFE 147
            :||||::|||||.|.|::||||.::|||:|:.|:.:|..|:.:|...:|||||.|:..::|:.|.
Zfish    70 FRTITSSYYRGAHGIIIVYDVTEQESFNNVKQWLEEIDRYACENVSKLLVGNKSDLSSKKVVDFT 134

  Fly   148 RGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKM-SESLDADPTLVG 198
            ...:..:.|.:...|||||...||:..|..:...|..:: ::|:..:...:|
Zfish   135 TAMEFTESLKIPLLETSAKNANNVEKAFLAMASEIQKRIGADSVQNETVKIG 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab3NP_001356961.1 Rab3 21..185 CDD:206657 78/163 (48%)
zgc:171927NP_001096112.1 Rab1_Ypt1 7..172 CDD:206661 79/164 (48%)
RAB 9..172 CDD:197555 78/162 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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