DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab3 and rab8b

DIOPT Version :9

Sequence 1:NP_001356961.1 Gene:Rab3 / 36127 FlyBaseID:FBgn0005586 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001092729.1 Gene:rab8b / 100093706 ZFINID:ZDB-GENE-070620-16 Length:209 Species:Danio rerio


Alignment Length:200 Identity:94/200 - (47%)
Similarity:146/200 - (73%) Gaps:0/200 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQ 80
            :.:||:||||:||:|.||||..|||:::|:|.:.|:||:|||||::|:....|::||||||||||
Zfish     3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 67

  Fly    81 ERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVIS 145
            ||:|||||||||||||.:|:||:|||.||:::::|:..|:.::..:.:.:::||||||.|:|.:|
Zfish    68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVS 132

  Fly   146 FERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGGQKGQRLTDQP 210
            .|||.:||...|::|.|||||.:.||:..|..|...|..:::..::.:....|||....::|:..
Zfish   133 KERGEKLAIDYGIKFLETSAKSSTNVEEAFVTLARDIMTRLNRKMNENNPSGGGGGGAVKITESR 197

  Fly   211 QGTPN 215
            ...|:
Zfish   198 SKKPS 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab3NP_001356961.1 Rab3 21..185 CDD:206657 87/163 (53%)
rab8bNP_001092729.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 89/165 (54%)
RAB 9..172 CDD:197555 87/162 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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