DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH13 and Ca12

DIOPT Version :10

Sequence 1:NP_610602.2 Gene:CAH13 / 36126 FlyBaseID:FBgn0033542 Length:527 Species:Drosophila melanogaster
Sequence 2:XP_063121841.1 Gene:Ca12 / 363085 RGDID:1306612 Length:355 Species:Rattus norvegicus


Alignment Length:299 Identity:82/299 - (27%)
Similarity:122/299 - (40%) Gaps:38/299 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 VLLLIRTPLQFGNTSCSRNSAPVYG----YDMQHGPHTWLPKSRSSSSSVEEATFFQSPVNIDES 120
            ||||:....|      ..:|||:.|    |....|...|..|..|...      ..|||:::...
  Rat    11 VLLLVILKEQ------PSSSAPLNGSKWTYIGPAGEKNWSKKYPSCGG------LLQSPIDLHSD 63

  Fly   121 QIQRMAIRELLSWNHYD-DLPASITLENTGQTLILRAQ----FHGNAPTISGADLLASYTFLELR 180
            .:|..|....|.:..|: .:...:.|.|.|.::.|...    ..|..|        ..|...:|.
  Rat    64 ILQYDASLAPLQFQGYNVSVEKLLNLTNDGHSVRLNLNSDMYIQGLQP--------HQYRAEQLH 120

  Fly   181 FHWGWCNS-EGSEHTINHRKFPLEMQVMHKTG---SGIPRTCTSSYDLLMIGYVFELSAHNPFLD 241
            .|||..|. .|||||::.:.|..|:.::|...   |........|..|.::..:.|:.:.||..|
  Rat   121 LHWGNRNDPHGSEHTVSGKHFAAELHIVHYNSDLYSDFGSASDKSEGLAVLAVLIEIGSVNPSYD 185

  Fly   242 PLVQNLRLVQKPGKRVQISPFPISYLMYQFRSGFYSYGGSLTHPPCYQGTEWFIFPESLAISDFQ 306
            .:..:|:.|:..|::|.|..|.|..|:.:....:|.|.||||.||||....|.:|...:.||..|
  Rat   186 KIFSHLQHVKYKGQQVLIPGFNIEELLPESPGEYYRYEGSLTTPPCYPTVLWTVFRNPVQISQEQ 250

  Fly   307 LRHFRLLL---GPDGISP--IARNSRPVQHMGNRVVSLN 340
            |......|   ..|..||  :..|.|.||....|:|.::
  Rat   251 LLALETALYFTHMDDPSPREMVNNFRQVQKFDERLVYIS 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAH13NP_610602.2 alpha_CARP_receptor_like 90..339 CDD:239396 72/262 (27%)
Ca12XP_063121841.1 None

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