DRSC/TRiP Functional Genomics Resources

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Protein Alignment stan and Cad89D

DIOPT Version :9

Sequence 1:NP_001260871.1 Gene:stan / 36125 FlyBaseID:FBgn0024836 Length:3648 Species:Drosophila melanogaster
Sequence 2:NP_650554.3 Gene:Cad89D / 42006 FlyBaseID:FBgn0038439 Length:2240 Species:Drosophila melanogaster


Alignment Length:1927 Identity:376/1927 - (19%)
Similarity:610/1927 - (31%) Gaps:809/1927 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   350 RELRNQSPYFEQALYVASVLEEQPAGAAVTTVRARDP-----------EDS---PVVYSMVSLLD 400
            |::.:..|.|.:.:|...:.|..|    :|.|..|.|           :||   .:||.::|   
  Fly   286 RDVDDLPPKFTEGVYRTRINEFYP----MTGVPIRIPLYFAPPIMAFDQDSLNASLVYDIIS--- 343

  Fly   401 SRSQSLFKVDSRTGVVTTSASLDRELM----DVHYFRVVATDDSFPPRSGTTTLQVNVLDCNDHS 461
            ...:.||:|:...||:.....:|.|..    :....::.|.....|.:.....::|.|||.||:.
  Fly   344 GNERQLFRVNPHNGVMYLQKEIDLEEESLPGNTFVLQLEARQKDNPLKKALARIEVEVLDLNDNV 408

  Fly   462 PTFEAEQFEASIREGATVGSTVITLRATDQDIGKNAEIEYGIEAVTDGAGLAQDQEMPIFRIDSR 526
            |.|||:.:..||.|....|.:|:.:.|.|:|.|:|:|..|.:....|.||        .||||||
  Fly   409 PEFEADYYNISIVENLPTGFSVLQVNAVDRDQGENSEFLYNLVETKDAAG--------AFRIDSR 465

  Fly   527 SGVISTRSS--LDRETSDSYHLLVTAADLASAQSE----RRTATASVQVKV--LDDNDNYPQFSE 583
            :|.|:.|..  ||||...|..|.|.|.:...:..:    ::...:.|||::  ||.|||.|:|..
  Fly   466 TGWITVRDDRLLDREQRRSIQLNVEALERNPSYLDDKHLKKPGPSKVQVEITLLDTNDNTPKFEH 530

  Fly   584 -RTYTVQVPEDQWGGTEDNTVAHIRATDADQGNNAAIRYAI---------------------IGG 626
             ..|..:||.:...|   ..:..:.|.|.|:|.|..:.|.:                     :||
  Fly   531 GNLYEFKVPINAPTG---YVIGQVVAHDPDEGPNGHLLYELQRPKGSGYIPFRLDNKNGTIYVGG 592

  Fly   627 ----------------------------------------------------------------- 626
                                                                             
  Fly   593 PLRRGRIAVFVEATDQPTNPSERRFSLAVITIEVYATIDDQAIDFVGAPYEFWVGANTPLGTSVG 657

  Fly   627 -------------------NTQSQ---FSIDSMSGDVSLVKPL--------DYESVRSYRLVIRA 661
                               :|.|:   |:|:..||.:::::.|        .:|:|.:|.....:
  Fly   658 QVRTTLIYEGGDEIMYDLLHTYSEGVPFAIEERSGIITVIRELSEFKRKVYQFEAVANYLFANSS 722

  Fly   662 QD--------------------------------------------------------------- 663
            |.                                                               
  Fly   723 QSLVMSRSSSPLTTIASPAELSDEGVLITNLTIHIVNKPEQKVPLRPVIEEINMNVIHFHVEENV 787

  Fly   664 -GG--------------------------SPSRSNTT---------------------------- 673
             ||                          .|:..|.|                            
  Fly   788 VGGIIGQLLYKNGINLVNNELGTYREMPSEPTSRNITMGSRFRSRNRSRSSKSKRRLPRRLVGDA 852

  Fly   674 -----------------------------------------------------------QLLVNV 679
                                                                       |:.:.|
  Fly   853 NIKLRYIIANQQEVVNKISITEDGTLLTLTGLDREQQPSYELTVIVEYSTGLVSGAGIYQVNIKV 917

  Fly   680 IDANDNAPRFYTSQFQESVLENVPVGYNI-----IRVQAYDSDEGANAEITYSI-SERDDNFPLA 738
            .|.|||||:|....:...:.||..||..:     |.:|  |:|||.|||....: .:..|.|.:.
  Fly   918 DDVNDNAPKFNALTYVGLINENCVVGTELSMNHAILIQ--DADEGPNAEFRVQLQGDYSDEFSIE 980

  Fly   739 V-------------------------------------DPRTGWVQT----------------IK 750
            .                                     :..|.::||                .:
  Fly   981 YVNGTSSENSTHHKMPSTTGAFNIFNLTDQWNDEFKYQELHTTFMQTNFKLSSGPYFRISYTGKR 1045

  Fly   751 PLDREEQGRFAFQVVAKD-GGVPPKSASSSVVITVQDVNDNDPAFN------------------- 795
            .||||:|..:..:::|.| ||:   |..:.:.:.|.|||||.|.|.                   
  Fly  1046 GLDREKQQLYNLKIIAADTGGL---SGYAHLTVLVADVNDNAPMFERISVFKDSRLEIREYTTDM 1107

  Fly   796 ------------------------PKYY-----------EANVG--------------------- 804
                                    |.|:           |.:||                     
  Fly  1108 EIYFVESSSGMTAPQATAAMMLAPPPYHIPGSPRFNVDRERSVGAGLGVVARAKSRRRMVRALTT 1172

  Fly   805 --------EDQPPGTPVTTVTATDPD--EDSRLHYEI-------TTGNTRGR------FAITSQN 846
                    ||.|.||.|..::|:|.|  :::.||||:       |.|....|      |||...:
  Fly  1173 KCPLFAIYEDTPVGTKVLQLSASDEDFGKNALLHYELQGEQVERTPGMPMLRVHGVKYFAIDKLS 1237

  Fly   847 GRGLITIAQSLDYKQEKRFLLTVAATDSGGRSDTATVHINITDANNFAPIFENAPYSASV----F 907
            |...:....|.:.:    .:|.:..||..|..|:..:...:.|.||.||.|:.:.||...    :
  Fly  1238 GELSVNYPLSANIE----IMLNLTVTDIDGLKDSTCLRFTVMDVNNHAPTFKKSWYSFDTPEGEY 1298

  Fly   908 EDAPVGTTVLVVSATDSDVGVNAQITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSG 972
            :|:.:|.    ::|.|.|.|.||.|||:|::..:       ||:|.|.:|.:.....||||....
  Fly  1299 KDSVLGQ----LTAIDMDFGENANITYTLSDSHL-------PFTIKPASGVLKIGGQLDRELKDK 1352

  Fly   973 YLLTVTAKDGG--NPSLSDTTDVEIGVTDVNDNAPAF---------------------KSPLYQA 1014
            |...|.|.|..  ...:|.:.|||:.|.|:|||.|.|                     ..|:|:|
  Fly  1353 YSFQVIATDNAPVMQRMSSSVDVEVNVLDINDNRPEFIGYDDQTKAVKFIPSVADRTLMLPVYKA 1417

  Fly  1015 SILEDALVGTSVIQVAASDPD-VGL-NGRIKYLLSDRDIEDGSFVIDPTSGTI----RTNKGLDR 1073
            .:......||.|.|:.|.|.| ||. ||.:.|.:..::::...|.||...|||    |.|...|.
  Fly  1418 YLDRSTQPGTFVRQLTAIDKDNVGNGNGLVLYSIRHQEMQAPLFQIDSRDGTISTISRINGYNDY 1482

  Fly  1074 ESVAVFHLTAIAVDKGSPPLSSTVEVQIRLED--VNDSPPTFASDKITLYVPENSPVGSVVGEIH 1136
            |.:   :::.||.|.|||.||:|..|.:.|:.  |.|.|.:         .|:..|..:|....|
  Fly  1483 EHL---NVSVIASDVGSPALSATAIVIVNLQGQAVTDPPKS---------TPKPEPPANVTVFQH 1535

  Fly  1137 AH------DPDEGVNAVVHYSIIGG--DDSNAFSLVTRPGSERAQ-------------LLTMTEL 1180
            |:      :.:|....|:..::..|  .::..:||....|.:...             |..:...
  Fly  1536 AYYEVKLTENNEAPIEVMRLNLSAGLNPENYRWSLWLEEGLDETDAHPPFEYDAKNMLLYALKPF 1600

  Fly  1181 DYESTRKRFELVVRA------------ASPPL---------RNDAHIEILVTDVNDNAPVLRD-- 1222
            |.|.. .|::|.:||            .|.|:         .|:..|.:.:.|.|||||..|.  
  Fly  1601 DREHI-SRYQLRIRADRLSREARNYARVSYPVVDERIEGLSLNECRILVHIADENDNAPKFRGNG 1664

  Fly  1223 ---FQVIFNNFRDHFPSGEIGRIPAFDAD--VSDKLHYRILSGNNANLLRLNSSSGGLVLSPQLN 1282
               ..|:..:....:|   :.|:.|.|.|  ::.::.||:|: ..|.|..::..||.:.|..:|:
  Fly  1665 QPIVAVLPQSASFGYP---VTRVEANDLDEGLNAEIRYRLLN-EPARLFGIDELSGNIRLLGELS 1725

  Fly  1283 TNVPKF-----ATMEVSVSDG-----------INEAKAIMQLSVRLITEDM----------LFNS 1321
            .....:     ||..:...||           |||||     .|||:...|          |..:
  Fly  1726 RTEHIYGFDVKATDRMGADDGRSGIVNVFVYIINEAK-----QVRLVVAGMPVEVERRIEGLMEA 1785

  Fly  1322 VTVRLNEMTEEAFLSPLLNFFLDGLAAIIPCPKEHIFVFSIQDDTDVSSRILNVSFSARRPDVSH 1386
            ::..:.:......|.|    :..||.     |..:.:::::...|   :.|:.:           
  Fly  1786 LSDAIGKDVRVRLLEP----YSGGLE-----PATNAYIYAVDPHT---NSIMEM----------- 1827

  Fly  1387 EEFYTPQYLQERVYLNRAILARLATVEVLPFDDNLCVREPCLN----FEECLTVLKFGNASEFIH 1447
                  :.||:          .||.:::    |.|.:::..|:    ....|.:.:||..:...|
  Fly  1828 ------EQLQD----------ALAGLQL----DALQLQQQKLDGGKPMPRILELAEFGQLARPAH 1872

  Fly  1448 SD-----------TVLFRPIYPVNTFACSCPEGFTGSKEHYLCDTEVDLCYSDPCQNGGTCVRR- 1500
            :.           ||:...:..:.....:|                   ||        .|:|: 
  Fly  1873 ASASSFMGGLEFVTVVLLALISLGALIAAC-------------------CY--------VCMRQK 1910

  Fly  1501 ------------EGGYTCVC---------------PSTHTGQNCETG-VGHLRP----CPSETCE 1533
                        :.|.|...               ...|| |.|..| .|..||    .|...| 
  Fly  1911 RRLWSQRDFSASDAGLTYTIAGIGSPRGQKQRRQRQQRHT-QRCSKGSTGSQRPTSAFMPESVC- 1973

  Fly  1534 GGLSCLSNYPSSQPPPYTATCELRARAFGRNSFLTFESLKQR-HRFNLKLRFATVQENGLLLYNG 1597
                      ||.....|||..              |.|:|: |..:.:...||.|::...|...
  Fly  1974 ----------SSAQTQSTATAT--------------EKLEQQLHHHHQQQAMATQQQHHQYLNEQ 2014

  Fly  1598 RYNELHDFIALEIHEGHVSFSFSLGDHSERISVIQEAKVSDG 1639
            :..:..::|.:.:.:                |:.:.|.|:.|
  Fly  2015 QRQQKREYIDVPLPK----------------SIAKAAAVTSG 2040

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stanNP_001260871.1 Cadherin_repeat 364..460 CDD:206637 26/113 (23%)
Cadherin_repeat 468..577 CDD:206637 38/116 (33%)
Cadherin_repeat 585..685 CDD:206637 32/392 (8%)
Cadherin_repeat 693..790 CDD:206637 32/156 (21%)
Cadherin_repeat 799..891 CDD:206637 30/146 (21%)
Cadherin_repeat 901..1003 CDD:206637 34/107 (32%)
Cadherin_repeat 1012..1108 CDD:206637 36/103 (35%)
Cadherin_repeat 1118..1216 CDD:206637 24/139 (17%)
Cadherin_repeat 1235..1313 CDD:206637 25/95 (26%)
EGF_CA 1483..1518 CDD:238011 9/62 (15%)
LamG 1558..1734 CDD:238058 13/83 (16%)
EGF 1760..1789 CDD:278437
Laminin_G_2 1826..1944 CDD:280389
TNFRSF <1963..2061 CDD:304602
EGF_Lam 2095..2140 CDD:214543
HRM 2144..2200 CDD:280888
GAIN 2293..2458 CDD:293098
GPS 2743..2802 CDD:295363
7tm_4 2809..3028 CDD:304433
Cad89DNP_650554.3 Cadherin_repeat 183..290 CDD:206637 1/3 (33%)
Cadherin_repeat 325..407 CDD:206637 19/84 (23%)
Cadherin_repeat 416..524 CDD:206637 38/115 (33%)
Cadherin_repeat 534..626 CDD:206637 12/94 (13%)
Cadherin_repeat 641..>714 CDD:206637 8/72 (11%)
CA 851..925 CDD:214520 6/73 (8%)
CA 1026..1085 CDD:214520 18/61 (30%)
Cadherin_repeat 1177..1280 CDD:206637 28/106 (26%)
Cadherin_repeat 1289..1385 CDD:206637 34/106 (32%)
Cadherin_repeat 1414..1510 CDD:206637 34/98 (35%)
CA 1576..1658 CDD:214520 15/82 (18%)
Cadherin_repeat 1666..1760 CDD:206637 20/97 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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