DRSC/TRiP Functional Genomics Resources

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Protein Alignment stan and Cad88C

DIOPT Version :10

Sequence 1:NP_001260871.1 Gene:stan / 36125 FlyBaseID:FBgn0024836 Length:3648 Species:Drosophila melanogaster
Sequence 2:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster


Alignment Length:2140 Identity:488/2140 - (22%)
Similarity:761/2140 - (35%) Gaps:623/2140 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 DNTGYSKRR----RRRSTQEMIQ-------------------------LNGNQLEEVFR-QNSTE 182
            |:..|.|.|    ||||....|.                         ::| |.|.|.| :.|.|
  Fly    15 DSMDYKKVRLKGQRRRSFSSYISSISIQVIILTTLISLVASNRPPRFAIDG-QSEIVLRLKESPE 78

  Fly   183 FRAGDLI--------------FG--DSFDNEMRHRILSRKRRAVGSPDPLHLQPALHRRISDAKQ 231
            .:.|.||              ||  :|.|:|     :.|.....|:...:.|...|.|.:.|   
  Fly    79 TKVGTLIYTLKGYDPDNDPLTFGKRNSHDSE-----IIRIENTGGNEAKIFLAKELDRELQD--- 135

  Fly   232 WISETYASYAI-------HTTDKWNQICLRRSQFINSLN----AFLPRSVCQHCK-------VSF 278
                   .|||       |.:|. |.:.......:..:|    .|||........       ||.
  Fly   136 -------EYAIVLTLTDSHYSDH-NYVTQSFLLLVEDINDNVPTFLPYQNAIEIPEGSAPGVVST 192

  Fly   279 LDVNDERFA----IEHQSRDLVASRDV-CIAESMWK--VSITFNIRCDRRDIVDSDHRLKIV--- 333
            |:..|....    :.:..::|....|| .||....|  :.:...:..:|:.:    ::|:::   
  Fly   193 LEATDADEGAYGQVVYYLQELDGDNDVFSIATHQGKGILRLQKELDYERKSL----YQLRVLAID 253

  Fly   334 -YHHQEFNDTDIARRVR-RELRNQSPYFEQALYVASVLEEQPAGAAVTTVRARDPE---DSPVVY 393
             .:....|....|..|: ::|.:|.|.|.:...||.:.|:.|.|..|..|||.|.:   ::|:.|
  Fly   254 RANQGPINTGTAAILVKVKDLEDQPPEFVEVQAVARIAEDAPVGTKVLRVRAIDGDRGINNPIAY 318

  Fly   394 SMVSLLDSRSQSLFKVDSRTGVVTTSASLDRE-----LMDVHYFRVVATDDS-----FPPRSGTT 448
            |:      .:..||.::..||:|.|...||||     :...|..|:.||:.|     ..|.:..|
  Fly   319 SL------EANDLFDINPHTGIVHTLTKLDREEQSDQVNGAHILRISATELSKSNTQMAPTTVRT 377

  Fly   449 TLQVNVLDCNDHSPTFEAEQFEASIREGATVGSTV------ITLRATDQDIGKNAEIEYGIEAVT 507
            .:.|.|.|.||..|||....:...:.|.|...:.:      :.....|.|.|.|......::...
  Fly   378 EVTVIVSDVNDEIPTFGETVYRCEVNENAQTNTPLNFIDEEVQNVVFDHDEGNNGTFRLFLDPPN 442

  Fly   508 DGAGLAQDQEMPIFRIDSRSGV--------ISTRSSLDRETSDSYHLLVTAADLASAQSERRTAT 564
            |           :|.|.....|        :....|||.|.....:..:.|.::   ....|.::
  Fly   443 D-----------LFEIVPELAVNEANFMLRVKNSKSLDFEQFTEVNFTIFAREV---DEPSRWSS 493

  Fly   565 ASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGN--NAAIRYAIIGGN 627
            |.||:.:.|.|||:|:||:..|...|.|:   ..:|..:.|::|.|.|.|:  ...|||..:.|.
  Fly   494 AHVQIFIRDQNDNFPEFSQTIYNASVLEN---SEQDTIITHVQAVDVDSGDYGTMGIRYTNLRGG 555

  Fly   628 TQSQFSIDSMSGDVSLVK----PLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPR 688
            .....:::.::|.:::.:    ..|.|.:..:.|.:.|.|.......||.|::|:::|.|||||.
  Fly   556 IAHLLNLNPITGVITIKQAGGTAFDREIISRHYLTVEAIDNAGQGNRNTAQIIVDILDVNDNAPT 620

  Fly   689 FYTSQFQESVLENVPVGYNIIRVQAYDSDEGA--NAEITYSISERDDNFPLAVDPRTGWVQTIKP 751
            |...|::..:|||.......::::|.|:|...  |:::||.|.|........:||::|.::.:..
  Fly   621 FPQRQYETKLLENQAEFETPLQLEARDADLNGTENSQVTYEIVEGLYRSNFTIDPQSGLLRPVHS 685

  Fly   752 LDREE-------------QGRFAFQ-----VVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPKY 798
            .|.||             .|.|:.:     |.|:|.|:|..|....|:|.|||||||.|.|...:
  Fly   686 FDFEELVDGSSRRSDPYTGGSFSIREIDLLVRARDSGIPMLSTVVPVLIYVQDVNDNAPIFQQSF 750

  Fly   799 YEANVGEDQPPGTPVTTVTATDPD---EDSRLHYEITTGNTRGRFAITSQNGRGLITIAQSL--- 857
            |...|.||.|.|:.|..|||.|.|   .::.:.|.|.|| ...:|.|.|:.  |:|::|...   
  Fly   751 YAKTVPEDLPGGSSVLQVTAIDRDGSAPNNVVVYRIQTG-AGDKFIINSET--GVISVAHGANLD 812

  Fly   858 -DYKQEKR--FLLTVAATDSG-GRSD---TATVHINITDANNFAPIFENAPYSASVFEDAPVGTT 915
             |..:.||  :.|:|.|.|.| |.|.   |.||:|:|.|.||..|:.:..| :..:.|:.||||.
  Fly   813 PDLTESKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVNNKPPVLKEMP-ALQILENTPVGTL 876

  Fly   916 VLVVSATDSDVGVNAQITYSLNEESING---------------LGSPDPFSINPQTGAIVTNAPL 965
            |..:.|||.|  ..|.:.|.||.|...|               ||:   |.::...|.:.....|
  Fly   877 VYRIQATDLD--HKAILRYKLNPEHCEGRTEEGALVKSSEYDFLGA---FEVDSIEGTLKVVKLL 936

  Fly   966 DRETTSGYLLTVTAKDGGNPSLSDTTD--VEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQ 1028
            |||......|.:|.:|..........:  :.|.|.|.|||.|.|:.|.|:.||.|:::.|..::.
  Fly   937 DRERVEHIKLAITVEDLAAAKGRQIAEGFLSIQVLDENDNNPKFRLPFYRQSITENSINGAMIVN 1001

  Fly  1029 VAASDPDVGLNGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPL 1093
            |.|||.|  .|..|.|.|...........:||.:|.|.....:|.|.....:.:..|.|.|.|..
  Fly  1002 VLASDVD--KNRTITYALEGNPTYRSLMHLDPQTGEIVVASKIDHEQHQWLNFSVRATDSGIPAR 1064

  Fly  1094 SSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDS 1158
            ||.|:|.|.:.|.||:.|.|........:.||:..|:.|..:.|.|.|.|....:.:.:......
  Fly  1065 SSLVDVYITVLDENDNNPYFVGGSKNYTISENAAPGTRVATLQAGDADSGDFGKITFLMDRISSQ 1129

  Fly  1159 NAFSLVTRPGSERAQLLTMTE-LDYESTRKRFELVVRA---------ASPPLRNDAHIEILVTDV 1213
            ..|::....|     :||:.: ||.|| :..:.||:.|         |.........:.|.:.|.
  Fly  1130 GKFTIDADTG-----VLTVADRLDRES-KDSYNLVIEAWDNYQFGFLAGESRNAFKQVFISILDE 1188

  Fly  1214 NDNAPVLRDFQ---VIFNNFRDHFPSGEIGRIPAFDAD----VSDKLHYRILSGNNANLLRLNSS 1271
            |||.|.: |..   |:...:  |.....:..|...|||    .:.:|.:.|..||...:..|.  
  Fly  1189 NDNPPEV-DLPMSCVLITEY--HELHERVASIVGKDADDPTTPNGRLDFAITRGNKDGMFELR-- 1248

  Fly  1272 SGGLVLSPQLNT-NVPKFATMEVSVSDGINEAKAIMQLSVRLITEDM------LFNSVTVRLNEM 1329
                    |::. |...||:..:....|        ..|:.:.|.||      :.|::.:.:::.
  Fly  1249 --------QIDAWNAQIFASKSLRNRYG--------NYSLTITTRDMGLPANIVHNTLDICVSDF 1297

  Fly  1330 TEEA--FLSPLLNFFLDGLAAIIPCPKEHIFVFSIQDDTDVSSRILNVSFS------------AR 1380
            .:.|  |:.||                 |.....|.::..|.:.||....|            ..
  Fly  1298 NDHAPVFVRPL-----------------HNTTVRIPENATVGTLILQAYASDGDMGQNALVRYRL 1345

  Fly  1381 RPDV--SHEEFYT-----PQYLQERVYLNRAILARLATVEVLPFDDNLCVREPCLNFEECLTVLK 1438
            :||.  |::.|..     ..:|:|:  |||. ..::..:.:..:|..|   ...|:.:..||:. 
  Fly  1346 KPDPLGSYKMFEVDGSTGELFLKEQ--LNRE-KQKIHEIRIEAYDQGL---PTSLSSDLDLTIY- 1403

  Fly  1439 FGNASEFIHSDTVLFRPIYPVNTFACSCPE-GFTGSKEHYLCDT------EVDLCYSDPCQ---- 1492
            ..|.::        :.|.:.||..:.:..| ...||:...|.||      |:|.....|.|    
  Fly  1404 VRNVND--------YEPQFMVNEISVNFTEHSDPGSERIKLPDTIDKDQLELDDPNDTPSQVCYF 1460

  Fly  1493 --NGGTCVRREGGYTCVCPSTH---------------------TGQNCET--------------- 1519
              ||     .|.||..:.|.||                     ..:||..               
  Fly  1461 IVNG-----NEAGYFRLDPETHILTVDRELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIE 1520

  Fly  1520 ------GVGH--------------LRPCPSETCEGG-----LSCLSNYPSSQPPP----YTATCE 1555
                  |:.|              ||  .:|:.|.|     |.....|.|||..|    .|...|
  Fly  1521 INNRLGGIVHNQQFGYDRFKHSRQLR--STESNEYGPEDAELLSYEAYDSSQEDPTGGLATTHPE 1583

  Fly  1556 L---------------------RARAF---------------------------GRNSFLTFESL 1572
            |                     |::.|                           ||..:.....:
  Fly  1584 LDSTVIKVKVRVLDINDNPPRFRSKIFTGGITTNADFGLKFMRVEATDADEGDNGRIGYYQVGEI 1648

  Fly  1573 KQRHRFNL----KLRFATVQENGLLLYN---------------------GRYNELHDFIALEIHE 1612
            :|.....|    |..|...||.|.:..|                     |..:..|.||.|...:
  Fly  1649 RQTLSEGLENVRKAPFLLDQETGEVQLNFDPQKGMKGYFDFVVLANDTSGMKDVAHVFIYLLRED 1713

  Fly  1613 GHVSFSF----------------SLGDHSERISVIQEAKVSDGKWHQVEVVYLNRSVTLVLDNCD 1661
            ..|.|.|                :|.:.:|.|..|.|.||.:.|...|:....:..:.|| :..|
  Fly  1714 QKVRFVFRLQPDELRSRVDSFRDTLSNITESIVNIDEIKVHENKDGSVDKTKTDLYMHLV-ERED 1777

  Fly  1662 TAIALSGQLGDRWSCANRTTLKLDKRCSLLTETCHRFLDLTGPLQVGGLPRIPAHFPVTNRDFVG 1726
            .:|....::           |||                            |.:|....|    |
  Fly  1778 NSIYEVSEV-----------LKL----------------------------IDSHIESLN----G 1799

  Fly  1727 CISDLRIDDRFVDLNSYVADNGTLAGCPQKAP---------------------LCQSEPCFNGGT 1770
            ...:|.:      |::..|:...|...|.:.|                     ||.|:       
  Fly  1800 LFKELNV------LDTQAAEAQLLTAGPSRGPLFVWLIFTNLFLATLLVVTIALCASQ------- 1851

  Fly  1771 CREGWGTYSCECPEGYAGNSCQDNIPAPWRFSGDGSLSFNPLLRP-IQLPWTTSFSLRTRQKEAF 1834
             |.|:....         .:.:.||     |.|..|:|......| .::|.|...|::       
  Fly  1852 -RNGYRRQL---------RAAKVNI-----FRGHSSMSLQDAQEPATRVPNTNKHSVQ------- 1894

  Fly  1835 LLQIQIGQNSSAAVCLRQGVLYYIFDGEPMYLAGAFLSDGEWHRVEIRWQQGSEIHFSVD 1894
                  |.|                   |::|.|   .|.||.:.|.....|.  |.|:|
  Fly  1895 ------GSN-------------------PIWLKG---YDNEWFKSEESGSIGG--HDSLD 1924

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stanNP_001260871.1 Cadherin_repeat 364..460 CDD:206637 34/108 (31%)
Cadherin_repeat 468..577 CDD:206637 21/122 (17%)
Cadherin_repeat 585..685 CDD:206637 25/105 (24%)
Cadherin_repeat 693..790 CDD:206637 33/116 (28%)
Cadherin_repeat 799..891 CDD:206637 38/104 (37%)
Cadherin_repeat 901..1003 CDD:206637 32/118 (27%)
Cadherin_repeat 1012..1108 CDD:206637 30/95 (32%)
Cadherin_repeat 1118..1216 CDD:206637 23/107 (21%)
EGF_CA 1483..1518 CDD:238011 12/61 (20%)
LamG 1558..1734 CDD:238058 40/243 (16%)
EGF 1760..1789 CDD:394967 4/28 (14%)
Laminin_G_2 1826..1944 CDD:460494 13/69 (19%)
TNFRSF <1963..2061 CDD:473981
EGF_Lam 2095..2140 CDD:214543
HRM 2144..2200 CDD:397086
GAIN 2290..2458 CDD:465137
GPS 2743..2802 CDD:470616
7tmB2_CELSR_Adhesion_IV 2809..3066 CDD:320557
TM helix 1 2811..2836 CDD:320557
TM helix 2 2845..2867 CDD:320557
TM helix 3 2880..2907 CDD:320557
TM helix 4 2919..2939 CDD:320557
TM helix 5 2956..2985 CDD:320557
TM helix 6 2997..3024 CDD:320557
TM helix 7 3028..3053 CDD:320557
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637 23/107 (21%)
Cadherin_repeat 179..276 CDD:206637 16/100 (16%)
Cadherin_repeat 287..388 CDD:206637 33/106 (31%)
Cadherin_repeat 397..506 CDD:206637 21/122 (17%)
Cadherin_repeat 514..617 CDD:206637 25/105 (24%)
Cadherin_repeat 625..742 CDD:206637 33/116 (28%)
Cadherin_repeat 751..853 CDD:206637 38/104 (37%)
Cadherin_repeat 865..976 CDD:206637 31/115 (27%)
Cadherin_repeat 985..1080 CDD:206637 31/96 (32%)
Cadherin_repeat 1090..1191 CDD:206637 23/106 (22%)
CA 1221..1302 CDD:214520 18/98 (18%)
Cadherin_repeat 1312..1409 CDD:206637 20/103 (19%)
Cadherin_repeat 1418..>1502 CDD:206637 18/88 (20%)
Cadherin_repeat 1617..1710 CDD:206637 14/92 (15%)
Blue background indicates that the domain is not in the aligned region.

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