DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stan and shg

DIOPT Version :9

Sequence 1:NP_001260871.1 Gene:stan / 36125 FlyBaseID:FBgn0024836 Length:3648 Species:Drosophila melanogaster
Sequence 2:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster


Alignment Length:1481 Identity:363/1481 - (24%)
Similarity:614/1481 - (41%) Gaps:312/1481 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   354 NQSPYFEQ-ALYVASVLEEQPAGAAVTTVRARDPEDSPVV-YSMVSLLDSRSQSLFKVDSRTGVV 416
            |:.|.|:. |.|...|.||||....|.||.|.||:...|: ||:|.....|.:  |.::..|||:
  Fly    82 NRKPAFKNCAGYAPKVKEEQPENTYVLTVEAVDPDPDQVIRYSIVQSPFERPK--FFINPSTGVI 144

  Fly   417 TTSASLDRELMDVH----YFRVVATDDSFPPRSGTTTLQVNVLDCNDHSPTFEAEQFEASIREGA 477
            .|:.:.||: ..:|    :..|.|||:..||.....|..|.:.|.||::|.|...:::.|:.|.|
  Fly   145 FTTHTFDRD-EPIHEKFVFVTVQATDNGLPPLDDVCTFNVTIEDINDNAPAFNKARYDESMSENA 208

  Fly   478 TVGSTVITLRATDQDIGKNAEIEYGIEAVTDGAGLAQDQEMPIFRIDSRSGVISTRSSLDRETSD 542
            ...:.|:|:.|:|.|.|.|:.:||.|         .::::...|:||..||:|..:..:|:....
  Fly   209 QPDAVVMTISASDFDDGNNSLVEYEI---------LRERDFQYFKIDKESGIIYLKRPIDKRPGQ 264

  Fly   543 SYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYT-VQVPEDQWGGTEDNTVAHI 606
            ||.::|.|.::  .....:.|...|:::|::.:...|.|.....| :.:.|:....|  :.:|.:
  Fly   265 SYAIIVRAYNV--VPDPPQDAQIEVRIRVVESSIKPPSFVNPIDTPIYLKENLKNFT--HPIATL 325

  Fly   607 RATDADQGNNAAIRYAIIGG-----NTQSQFSIDSMSGDV--SLVKPLDYESVRSYRLVIRAQDG 664
            ||. ::..:...:.:.:..|     |:::.|..:.:..:|  ||.|.||||::..|.|.:..:: 
  Fly   326 RAV-SNMPDKPEVIFELNTGRTEQTNSKNTFVFNQIGNEVTISLGKTLDYEAITDYTLTMIVRN- 388

  Fly   665 GSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIRVQAYDSD-EGANAEITYSI 728
             :.......|:.:.|.|.|||.| :||.....::|||.|.|..:::|:|:|.| ..||..:::.:
  Fly   389 -THELGTEHQIKIQVEDVNDNIP-YYTEVKSGTILENEPPGTPVMQVRAFDMDGTSANNIVSFEL 451

  Fly   729 SERDDNFPLAVDPRTGWVQTIKPLDREEQGRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPA 793
            ::..:.|  .:||.||.:..:...||||:..:..:|:|                     :||.|:
  Fly   452 ADNREYF--TIDPNTGNITALTTFDREERDFYNVKVIA---------------------SDNSPS 493

  Fly   794 FNPKYYEANVGEDQPPGTPVTTVTATDPDEDSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLD 858
                                   :..|..|.:|.|                              
  Fly   494 -----------------------SLFDNGEPNRGH------------------------------ 505

  Fly   859 YKQEKRFLLTVAATDSGGRSDTATVHINITDANNFAPIFENAPYSAS-VFEDAPVGTTVLVVSAT 922
                                  ....|:|.|.|:..|.|:...|.|. :.|||...|.|:.|.|.
  Fly   506 ----------------------QVFRISIGDKNDHKPHFQQDKYLAERLLEDANTNTEVIEVKAE 548

  Fly   923 DSDVGVNA-QITYSLNEESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPS 986
            |.|   || ||.||:...::.     |.|.|..:||.|..|..||.||.:.|.|.|.|.||   .
  Fly   549 DED---NASQILYSIESGNVG-----DAFKIGLKTGKITVNQKLDYETITEYELKVRAFDG---I 602

  Fly   987 LSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDPDVGLNGRIKYLLSDRDI 1051
            ..|.|.|.|.:.|||||.|.||.. |..:|||:......::.|.|.|||:......::::.....
  Fly   603 YDDYTTVVIKIEDVNDNPPVFKQD-YSVTILEETTYDDCILTVEAYDPDIKDRNADQHIVYSIHQ 666

  Fly  1052 EDGS-FVIDPTSGTIRTNKGLDRE--------SVAVFHLTAIAVDKGSPPLSSTVEVQIRLEDVN 1107
            .||: :.|| .||.:|..|.|||:        .|.:   .|...|.....:|:..||.:.|:|:|
  Fly   667 NDGNRWTID-NSGCLRLVKTLDRDPPNGHKNWQVLI---KANDEDGVGTTVSTVKEVTVTLKDIN 727

  Fly  1108 DSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSNAF-SLVTRPGSER 1171
            |:.| |..:::.:|..||...|.|| ::.|:|.|:...|   .:...|.||.|. .:.|:...:.
  Fly   728 DNAP-FLINEMPVYWQENRNPGHVV-QLQANDYDDTPGA---GNFTFGIDSEATPDIKTKFSMDG 787

  Fly  1172 AQLLTMTELDYESTRKRFELVVRAASPPLRNDAHIEIL---VTDVNDNAPVLRDFQVIFNNFRDH 1233
            ..|....:.|.|: :|.:.:.:|.:...:...:.:.||   :.||||||......::...|::..
  Fly   788 DYLHANVQFDREA-QKEYFIPIRISDSGVPRQSAVSILHLVIGDVNDNAMSEGSSRIFIYNYKGE 851

  Fly  1234 FPSGEIGRI---PAFDADVSDK-LHYRILSGNNANLLRLNSSSGGLVLSPQLNTNVPKFATMEVS 1294
            .|..:|||:   ...|.|:.|| ..::.|..:.   .|||.|:|  :::..::|...::....|.
  Fly   852 APETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQ---FRLNPSTG--MITMLVHTAEGEYDLSFVV 911

  Fly  1295 VSDGI----NEAKAIMQLSVRLITEDMLFNSVTVRLNEMTEEAFLSPLLNF-------FLD---- 1344
            ..|.:    :...|.:.:.||.:.|:.:..|.::|...:|:|.|:|...:|       ..|    
  Fly   912 TEDSMFVPRHSVDAYVTVVVRELPEEAVDKSGSIRFINVTKEEFISVPRDFQSPDALSLKDRLQL 976

  Fly  1345 GLAAIIPCPKEHIFVFSIQDDTDVSSRILNVSFSARRPDVSHEEFYTPQYLQERVYLNRAILARL 1409
            .||.:......::.||::..:   .:..|:|.|||.     ...:|.|:.|...|..|:..|...
  Fly   977 SLAKLFNTSVSNVDVFTVLQN---ENHTLDVRFSAH-----GSPYYAPEKLNGIVAQNQQRLENE 1033

  Fly  1410 ATVEVLPFDDNLCVREPCLNFEECLTVLKFGNASEFIHSDTVLFRPIYPVNTFA---CSCPEGFT 1471
            ..:::|..:.:.|:.|.....|.|...|...:....|:|:|..|   ..||.|.   |.|     
  Fly  1034 LDLQMLMVNIDECLIEKFKCEESCTNELHKSSVPYMIYSNTTSF---VGVNAFVQAQCVC----- 1090

  Fly  1472 GSKEHYLCDTEVDLCYSDPCQNGGTCVRREGGYTCVCPSTHTGQNCETGVGHLRPCPSETCEGGL 1536
                      |..|...  |.|||              |...|:|             :.|:   
  Fly  1091 ----------EAPLMRR--CLNGG--------------SPRYGEN-------------DVCD--- 1113

  Fly  1537 SCLSNYPSSQPPPYTATCELRARAFGRNSFLTFESLKQRHRFNLKLRFATVQENGLLLYNGRYN- 1600
             |:..:..    |:   |||.:.||..:.:..:|.:...:...:.|......:.||::|.|..| 
  Fly  1114 -CIDGFTG----PH---CELVSVAFYGSGYAFYEPIAACNNTKISLEITPQIDQGLIMYLGPLNF 1170

  Fly  1601 ----ELHDFIALEIHEGHVSFSFSLGDHSERISVIQEAKVSDGKWHQVEVVYLNRSVTLVLDNC- 1660
                .:.||:|||:..|:...:...|..:.||. .|..|:...:.:|::::....|:.:.:||| 
  Fly  1171 NPLLAISDFLALELDNGYPVLTVDYGSGAIRIR-HQHIKMVADRTYQLDIILQRTSIEMTVDNCR 1234

  Fly  1661 -DTAIALSGQLGDRWSCANRTTLKLDKRCSLLTETCHRFLDLTGPLQVGGLP------------- 1711
             .|...|...:|.                       :.||::..|||:||.|             
  Fly  1235 LSTCQTLGAPIGP-----------------------NEFLNVNAPLQLGGTPVDLEQLGRQLNWT 1276

  Fly  1712 RIPAHFPVTNRDFVGCISDLRIDDRFVDLNSYVADNGTLAGCPQKAPLCQS 1762
            .:|     ..:.|.|||.:|.|:::..:|..........:||.|...:..|
  Fly  1277 HVP-----NQKGFFGCIRNLTINEQTYNLGMPSVFRNIDSGCQQSVAVAFS 1322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stanNP_001260871.1 Cadherin_repeat 364..460 CDD:206637 35/100 (35%)
Cadherin_repeat 468..577 CDD:206637 27/108 (25%)
Cadherin_repeat 585..685 CDD:206637 23/107 (21%)
Cadherin_repeat 693..790 CDD:206637 22/97 (23%)
Cadherin_repeat 799..891 CDD:206637 7/91 (8%)
Cadherin_repeat 901..1003 CDD:206637 41/103 (40%)
Cadherin_repeat 1012..1108 CDD:206637 28/104 (27%)
Cadherin_repeat 1118..1216 CDD:206637 25/101 (25%)
Cadherin_repeat 1235..1313 CDD:206637 20/85 (24%)
EGF_CA 1483..1518 CDD:238011 8/34 (24%)
LamG 1558..1734 CDD:238058 42/195 (22%)
EGF 1760..1789 CDD:278437 1/3 (33%)
Laminin_G_2 1826..1944 CDD:280389
TNFRSF <1963..2061 CDD:304602
EGF_Lam 2095..2140 CDD:214543
HRM 2144..2200 CDD:280888
GAIN 2293..2458 CDD:293098
GPS 2743..2802 CDD:295363
7tm_4 2809..3028 CDD:304433
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 35/100 (35%)
Cadherin_repeat 200..292 CDD:206637 26/102 (25%)
CA 332..410 CDD:214520 19/79 (24%)
Cadherin_repeat 417..518 CDD:206637 33/198 (17%)
Cadherin_repeat 531..619 CDD:206637 39/98 (40%)
Cadherin_repeat 627..729 CDD:206637 29/105 (28%)
Cadherin_repeat 736..834 CDD:206637 25/102 (25%)
LamG 1127..1294 CDD:238058 42/195 (22%)
Cadherin_C 1358..1489 CDD:279398
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I7599
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.010

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