DRSC/TRiP Functional Genomics Resources

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Protein Alignment stan and CadN2

DIOPT Version :10

Sequence 1:NP_001260871.1 Gene:stan / 36125 FlyBaseID:FBgn0024836 Length:3648 Species:Drosophila melanogaster
Sequence 2:NP_609855.3 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster


Alignment Length:137 Identity:32/137 - (23%)
Similarity:50/137 - (36%) Gaps:52/137 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 GLHKMVAGRLDDIYK----TGKLAHSELDERALDALKEFHVEG--------ALDVLDQFLDS-NL 87
            |.|.::|..:..:|.    |.||.||.  :|.:..|.|  |.|        ||::  .|.:| |.
  Fly    67 GYHLLMAEGIVLLYSGNGWTQKLTHSH--KRTVHWLIE--VVGCSCCVVGIALEI--YFRESTNR 125

  Fly    88 EHVSN--------KSAFLC-----GVMKTYRQKVRATQQGQPAPAVTVQAKGPDEEKIKAILERT 139
            .|.|:        ..|||.     |:|..:..::|                    .:|:.|..:.
  Fly   126 RHFSSTHSIVGLVSLAFLALTLVNGLMALFAPELR--------------------RRIRPIYSKL 170

  Fly   140 GYTLDVT 146
            |:.|..|
  Fly   171 GHYLTGT 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stanNP_001260871.1 Cadherin_repeat 364..460 CDD:206637
Cadherin_repeat 468..577 CDD:206637
Cadherin_repeat 585..685 CDD:206637
Cadherin_repeat 693..790 CDD:206637
Cadherin_repeat 799..891 CDD:206637
Cadherin_repeat 901..1003 CDD:206637
Cadherin_repeat 1012..1108 CDD:206637
Cadherin_repeat 1118..1216 CDD:206637
EGF_CA 1483..1518 CDD:238011
LamG 1558..1734 CDD:238058
EGF 1760..1789 CDD:394967
Laminin_G_2 1826..1944 CDD:460494
TNFRSF <1963..2061 CDD:473981
EGF_Lam 2095..2140 CDD:214543
HRM 2144..2200 CDD:397086
GAIN 2290..2458 CDD:465137
GPS 2743..2802 CDD:470616
7tmB2_CELSR_Adhesion_IV 2809..3066 CDD:320557
TM helix 1 2811..2836 CDD:320557
TM helix 2 2845..2867 CDD:320557
TM helix 3 2880..2907 CDD:320557
TM helix 4 2919..2939 CDD:320557
TM helix 5 2956..2985 CDD:320557
TM helix 6 2997..3024 CDD:320557
TM helix 7 3028..3053 CDD:320557
CadN2NP_609855.3 Cadherin_repeat 41..132 CDD:206637 21/70 (30%)
Cadherin_repeat 140..248 CDD:206637 11/58 (19%)
Cadherin_repeat 256..359 CDD:206637
CA 388..483 CDD:214520
Cadherin_repeat 489..586 CDD:206637
Cadherin_repeat 594..703 CDD:206637
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 1233..1259 CDD:400365
LamG 1265..1426 CDD:238058
EGF_CA 1497..1535 CDD:238011
CADH_Y-type_LIR 1662..1719 CDD:460041
Blue background indicates that the domain is not in the aligned region.

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