DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stan and ft

DIOPT Version :9

Sequence 1:NP_001260871.1 Gene:stan / 36125 FlyBaseID:FBgn0024836 Length:3648 Species:Drosophila melanogaster
Sequence 2:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster


Alignment Length:2268 Identity:568/2268 - (25%)
Similarity:907/2268 - (39%) Gaps:501/2268 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 IKSYLIIVHEDTPPGTVIFNASVYKLGSERHYKINAHKSANFV--H-HLVSVNHKDGQIQLRKAL 88
            ::||...|.|:.|.||.:....    .:::...:||....|.:  | |...::.:.|:|.....|
  Fly  2493 LQSYHATVRENLPSGTHVLTPR----ATDKDEGLNAKLRFNLLGEHMHRFHIDSETGEISTATTL 2553

  Fly    89 KCD--GIYYPNLFTFYVDSTSNRLRSIDYYSLPVRIFVSGHSCNEDRRIEQELHHHHYEEEDNTG 151
            ..:  .:|:..|.......|..|..|       |.:.:|....|:           :..:.|:|.
  Fly  2554 DREETSVYHLTLMAQDSSITEPRASS-------VNLTISVSDVND-----------NIPKFDSTT 2600

  Fly   152 YSKRRRRRSTQEMIQLNGNQLEEVFRQNSTEFRAGDLIFG------DSFDNEMRHRILS------ 204
            |:.....|.::                       |:.:||      |..:|.:.|..:|      
  Fly  2601 YNVAVPERISK-----------------------GEFVFGARALDLDDGENAVVHYTISGRDQHY 2642

  Fly   205 ----RKRRAVGSPDPLHLQPALHRRISDAKQWISETYASYAIHTTDKWNQICLRRSQFINSLN-- 263
                .|...|.:...|..:...|..:         || :..|...|:..|....:::....|.  
  Fly  2643 FDINTKTGVVSTKLELKTKTKSHDDL---------TY-TIVISAMDQGEQSLSSKAELTVILRPP 2697

  Fly   264 AFLPRSVCQHCKVSFLDVNDERFAIEHQSRDLVASRDVCIAESMWKVSITF-------------- 314
            ...|         :|..:.:..||:         |.||...:.:.|||.|.              
  Fly  2698 ELFP---------TFAYMANSHFAM---------SEDVRPGKMITKVSATSPKKGLVGKIRYAIA 2744

  Fly   315 ------NIRCDRRDIVDS------DHRLKIVYH---HQEFNDTDIARRVR------RELRNQSPY 358
                  ::|.|....:.|      |:.|..:|.   .....||...|.|.      .:..:.:|.
  Fly  2745 GGIMGDSLRVDPNSGLLSVGQDGLDYELTHLYEIWIEAADGDTPSLRSVTLITLNVTDANDNAPV 2809

  Fly   359 FEQALYVASVLEEQPAGAAVTTVRARD---PEDSPVVYSMVSLLDSRSQSLFKVDSRTGVVTTSA 420
            .||.:|.|.||||:.....:..|:|.|   .::..|:|.:.:..|    ..|:: :.:|.:.|..
  Fly  2810 MEQLIYNAEVLEEESPPQLIAVVKASDRDSGDNGNVIYRLQNDFD----GTFEI-TESGEIYTRM 2869

  Fly   421 SLDRELMDVHYFRVVATDDSFPPRSGTTTLQVNVLDCNDHSPTFEAEQFEASIREGATVGSTVIT 485
            .||||.:..:.|.|.|.|...|..:||.::.:::||.||:.|.| ...|..::.|.|.:||.||.
  Fly  2870 RLDREEIGDYAFVVEAVDQGVPHMTGTASVLLHLLDKNDNPPKF-TRLFSLNVTENAEIGSFVIR 2933

  Fly   486 LRATDQDIGKNAEIEYGIEAVTDGAGLAQDQEMP--IFRIDSRSGVISTRSSLDRETSDSYHLLV 548
            :.::|.|:|.||...|..            .|.|  .|||:.:||.|:....||||..|.|.|.|
  Fly  2934 VTSSDLDLGANANASYSF------------SENPGEKFRIEPQSGNITVAGHLDREQQDEYILKV 2986

  Fly   549 TAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDAD- 612
            .|:|.|      ..|...:.:.:.|.|||.|:|....|:...||.|   .....|..|.|||.| 
  Fly  2987 VASDGA------WRAETPITITIQDQNDNAPEFEHSFYSFSFPELQ---QSIALVGQIIATDRDK 3042

  Fly   613 QGNNAAIRYAI------------------------------------------------------ 623
            ||.|:.|.|::                                                      
  Fly  3043 QGPNSVISYSLQQPSPMFSIDPATGEVFSKKAVRFKHSQYVRSPENMYALTVLATDNGKPPLYSE 3107

  Fly   624 ------------------------------IGG--------------------------NTQSQF 632
                                          :.|                          |..|.|
  Fly  3108 CLVNINIVDAHNNPPKFEQAEYLAPLPQDAVRGQRIVRVHANDKQDLGTNEMDYSLMTFNLSSIF 3172

  Fly   633 SIDSMSGDVSLVKPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQES 697
            |:....|.::||||:.......|.||:||.|.|.|.:|:.|::::.|...|.:.|||..:.:|..
  Fly  3173 SVGRHDGWITLVKPIQVPPNTRYELVVRATDRGVPPQSDETRVVIVVTGENMDTPRFSVNSYQVI 3237

  Fly   698 VLENVPVGYNIIRVQAYDSDEGANAEITYSISERDDNFPLAVDPRTGWVQTIKPLDREEQGRFAF 762
            |.||.|||..|:.|.|.|.|.|.|..:.||||..::....:||.|||.:...:.||.:....:..
  Fly  3238 VPENEPVGSTILTVGATDDDTGPNGMLRYSISGGNERQDFSVDERTGGIVIQQQLDYDLIQEYHL 3302

  Fly   763 QVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPD--EDS 825
            .:..:|.|..|.|:.:.:.|.:.|||||.|.||.|.|...:.|::|.||.|....|.|.|  :::
  Fly  3303 NITVQDLGYHPLSSVAMLTIILTDVNDNPPVFNHKEYHCYIPENKPVGTFVFQAHAADKDSPKNA 3367

  Fly   826 RLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGRSDT-ATVHINITD 889
            .:||..........|.|.:|: .|.|:.|.|.||::.:.:.|.:.|.:.....:: |.:::::..
  Fly  3368 IIHYAFLPSGPDRHFFIMNQS-NGTISSAVSFDYEERRIYTLQIKAKNPDSSMESYANLYVHVLG 3431

  Fly   890 ANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQITYSLNEESINGLGSPDP--FSI 952
            .|.|.|.|....:...|.|.:.|||.|..|.|||.|.|.:.::.|.|       :||.:.  |.|
  Fly  3432 VNEFYPQFLQPVFHFDVSETSAVGTRVGAVQATDKDSGEDGRVYYLL-------VGSSNDKGFRI 3489

  Fly   953 NPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVE--IGVTDVNDNAPAFKSPLYQAS 1015
            :..||.|.....|||||.:..:|||.||:.|:...:||.:.:  |.:.|.|| .|.|....|.::
  Fly  3490 DTNTGLIYVARHLDRETQNRVVLTVMAKNYGSIRGNDTDEAQVIISIQDGND-PPEFIKHYYTST 3553

  Fly  1016 ILEDALVGTSVIQVAASDPDVGL-NGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVF 1079
            |.|.|.|||.|..|.|.|.||.. |.:..|.:.:.:::. ||.||..:|.|.|...||||..:.:
  Fly  3554 ISEAAPVGTKVTTVKAIDKDVRTQNNQFSYSIINGNLKQ-SFKIDVQTGEISTASRLDREETSTY 3617

  Fly  1080 HLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGV 1144
            :|...|:|.|.||.:.:..|.|.||||||:.|||..:.:..|:.||.|.|:.:..:.|.|||...
  Fly  3618 NLVIGAIDTGLPPQTGSATVHIELEDVNDNGPTFTPEGLNGYISENEPAGTSIMTLIASDPDLPR 3682

  Fly  1145 N-AVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYESTRKRFELV-VRAASPPLRNDAH-I 1206
            | ....|.:|||...:..|:....|..|    :.|..|.|.|.....:: |..:..|.:...| :
  Fly  3683 NGGPFTYQLIGGKHKSWLSVDRNSGVVR----STTSFDREMTPILEAIIEVEDSGKPKQKSQHLL 3743

  Fly  1207 EILVTDVNDNAPVLRDFQVIFNNFRDHFPSG-EIGRIPAFDADVSDKLHYRILSGNNANLLRLNS 1270
            .|.|.|.|||....|...:..:.|....||. ::..:...|.|:......|:......:.|:|..
  Fly  3744 TITVLDQNDNPSTTRSLHIAVSLFNGDLPSNVKLADVRPNDIDIVGDYRCRLQKNPAQSQLQLAI 3808

  Fly  1271 SSGGLVLSPQLNTNVPKFATMEVSVSDGIN-EAKAIMQLSVRLITEDMLFNSVTVRLNEMTEEAF 1334
            .....:::....|  |..:....:.:||.: :..:.:.::.:....:.|.|||::.:..||...|
  Fly  3809 PRACDLITTSHTT--PIASVFSYTGNDGKHGDVSSKVSVAFQSFNNETLANSVSIMVRNMTAYHF 3871

  Fly  1335 LS----PLLNFFLDGLAAIIPCPKEHIFVFSIQDDTDVSSRILNVSFSARRPDVSHEEFYTPQYL 1395
            |:    |:|......::     .::.:.::|:.:....:|..|.:..:.|....|:::   |:||
  Fly  3872 LANHYRPILEMIKSRMS-----NEDEVILYSLLEGGSGNSTNLQLLMAVRLAKTSYQQ---PKYL 3928

  Fly  1396 QERVYLNRAILARLATVEVLPFDDNLCVREPCLNFEECLTVLKFGNASEFIHSDT---VLFRPIY 1457
            .||:...|:..:.|...||:...:.....:.|.|...|...::..:|..|:..|:   ||..| .
  Fly  3929 IERLREKRSAFSELLQKEVIVGYEPCSEPDVCENGGVCSATMRLLDAHSFVIQDSPALVLSGP-R 3992

  Fly  1458 PVNTFACSCPEGFTGSK------------------------------------EHYLCDTE-VDL 1485
            .|:.::|.|..||:|.:                                    :|  |:.| .|:
  Fly  3993 VVHDYSCQCTSGFSGEQCSRRQDPCLPNPCHSQVQCRRLGSDFQCMCPANRDGKH--CEKERSDV 4055

  Fly  1486 CYSDPCQNGGTCVRREGG--YTCVCPSTHTGQNCETGVGHLRPCPSETC-EGGLSCLSNYP---- 1543
            |||.||:|||:|.|...|  |.|:|.....|..||:.....||.|   | .||| |:|..|    
  Fly  4056 CYSKPCRNGGSCQRSPDGSSYFCLCRPGFRGNQCESVSDSCRPNP---CLHGGL-CVSLKPGYKC 4116

  Fly  1544 SSQPPPYTATCELRARAFGRNSFLTFESLKQRHRFNLKLRFATVQENGLLLYN------GRYNEL 1602
            :..|..|...||..:..|...|::||.:|..... ::.:.|||.:.|.|||||      ||    
  Fly  4117 NCTPGRYGRHCERFSYGFQPLSYMTFPALDVTTN-DISIVFATTKPNSLLLYNYGMQSGGR---- 4176

  Fly  1603 HDFIALEIHEGHVSFSFSLGDHSERISVIQEAKVSDGKWHQVEVVYLNRSVTLVLDNCDTAIALS 1667
            .||:|:|:..|...|| |.|..:...:||....::||.||:|......|.::|.:..|    |.|
  Fly  4177 SDFLAIELVHGRAYFS-SGGARTAISTVIAGRNLADGGWHKVTATRNGRVMSLSVAKC----ADS 4236

  Fly  1668 GQL------GDRWSCANRT----TLKLDKRCSLLTETCHRFLDLTGPLQVGGL----PRIPAHFP 1718
            |.:      ||....|:..    ||..:|:                ||.:|||    |.:.....
  Fly  4237 GDVCTECLPGDSSCYADEVGPVGTLNFNKQ----------------PLMIGGLSSADPILERPGQ 4285

  Fly  1719 VTNRDFVGCISDLRIDDRFVDLNSYVADNGTLAGCPQKA--PLCQSEPCFN-GGTCREGWGTYSC 1780
            |.:.|.|||:..:.|..|.::|:..:...|.||||.::|  |...:|.|.. .|.|.:.|.:..|
  Fly  4286 VHSDDLVGCLHSVHIGGRALNLSLPLQQKGILAGCNRQACQPALAAERCGGFAGQCIDRWSSSLC 4350

  Fly  1781 ECPEGYAGNSCQDNI-PAPWRFSGDGS---LSFNPLLRPIQL---------PWTTSFSLRTRQKE 1832
            :|........|.|:: |..   .|:|:   ...:.:.|.:||         .|..:..:|.|:..
  Fly  4351 QCGGHLQSPDCSDSLEPIT---LGEGAFVEFRISEIYRRMQLLDNLYNSKSAWLDNQQMRERRAV 4412

  Fly  1833 A-FLLQIQI-----------------GQNSSAA-------VCLRQGVLYYIFDGEPMYL-----A 1867
            : |....||                 ||...||       :.||:|.|.| :..:.:.:     .
  Fly  4413 SNFSTASQIYEAPKMLSMLFRTYKDQGQILYAATNQMFTSLSLREGRLVY-YSKQHLTINMTVQE 4476

  Fly  1868 GAFLSDGEWHRVEIRWQQGSEIHFSVDYGQRSGSVPMSQKVQGL------YVGKIVMGSPDGSIG 1926
            .:.|:||:||.|.: :.:...:...|| |::.|.   ...:.|:      |:..:.:|.      
  Fly  4477 TSTLNDGKWHNVSL-FSESRSLRLIVD-GRQVGD---ELDIAGVHDFLDPYLTILNVGG------ 4530

  Fly  1927 AVPEASPFEGCIQDVRI--------GAGQSVLSRPTIRENVEDGC-----ESRAQCPD 1971
               ||  |.||:.:|.:        |:| |:.........:|.||     :..||..|
  Fly  4531 ---EA--FVGCLANVTVNNELQPLNGSG-SIFPEVRYHGKIESGCRGDIGQDAAQVAD 4582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stanNP_001260871.1 Cadherin_repeat 364..460 CDD:206637 29/98 (30%)
Cadherin_repeat 468..577 CDD:206637 35/110 (32%)
Cadherin_repeat 585..685 CDD:206637 37/210 (18%)
Cadherin_repeat 693..790 CDD:206637 33/96 (34%)
Cadherin_repeat 799..891 CDD:206637 23/94 (24%)
Cadherin_repeat 901..1003 CDD:206637 37/105 (35%)
Cadherin_repeat 1012..1108 CDD:206637 38/96 (40%)
Cadherin_repeat 1118..1216 CDD:206637 28/100 (28%)
Cadherin_repeat 1235..1313 CDD:206637 11/79 (14%)
EGF_CA 1483..1518 CDD:238011 16/36 (44%)
LamG 1558..1734 CDD:238058 55/195 (28%)
EGF 1760..1789 CDD:278437 7/29 (24%)
Laminin_G_2 1826..1944 CDD:280389 33/161 (20%)
TNFRSF <1963..2061 CDD:304602 4/14 (29%)
EGF_Lam 2095..2140 CDD:214543
HRM 2144..2200 CDD:280888
GAIN 2293..2458 CDD:293098
GPS 2743..2802 CDD:295363
7tm_4 2809..3028 CDD:304433
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637
Cadherin_repeat 163..266 CDD:206637
Cadherin_repeat 275..378 CDD:206637
Cadherin_repeat 393..490 CDD:206637
Cadherin_repeat 498..594 CDD:206637
Cadherin_repeat 603..704 CDD:206637
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:278457
Cadherin 950..1026 CDD:278457
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637 23/118 (19%)
Cadherin_repeat 2600..2694 CDD:206637 18/126 (14%)
Cadherin_repeat 2710..2806 CDD:206637 19/104 (18%)
Cadherin_repeat 2814..2909 CDD:206637 29/99 (29%)
Cadherin_repeat 2917..3009 CDD:206637 35/109 (32%)
Cadherin 3018..3114 CDD:278457 15/98 (15%)
Cadherin 3129..3220 CDD:278457 20/90 (22%)
Cadherin_repeat 3233..3330 CDD:206637 33/96 (34%)
Cadherin_repeat 3338..3434 CDD:206637 23/96 (24%)
Cadherin_repeat 3443..3541 CDD:206637 36/104 (35%)
Cadherin_repeat 3550..3647 CDD:206637 39/97 (40%)
Cadherin_repeat 3657..3753 CDD:206637 28/99 (28%)
EGF 4017..4047 CDD:278437 0/29 (0%)
EGF_CA 4056..4090 CDD:238011 15/33 (45%)
EGF_CA 4094..4128 CDD:238011 12/37 (32%)
Laminin_G_1 4156..4306 CDD:278483 52/174 (30%)
LamG 4428..4543 CDD:238058 28/131 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462299
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.