DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Elp2 and SED4

DIOPT Version :10

Sequence 1:NP_610600.1 Gene:Elp2 / 36123 FlyBaseID:FBgn0033540 Length:794 Species:Drosophila melanogaster
Sequence 2:NP_009993.1 Gene:SED4 / 850431 SGDID:S000000663 Length:1065 Species:Saccharomyces cerevisiae


Alignment Length:480 Identity:89/480 - (18%)
Similarity:148/480 - (30%) Gaps:165/480 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 VGGNS----VGF--YGGKFSGDGHSIMAHSYQGGFHIWSQDPDRPQLWTPGVIVGGHYGEVRDLA 393
            :.|||    ||:  ||.||..:|..::|   .||....|..|::............|....|::.
Yeast     1 MSGNSANYDVGYPIYGAKFINEGTLLVA---GGGGQFNSSFPNKITALKVNFQKKKHIRRFREIT 62

  Fly   394 WEHSGAYLMTASADQTTRLHAPWLQD--------GANPTWHELARPQIHG------YDMQALALL 444
            .:         |.|.     ||...|        |.|..:::.:...::.      ::.:.|..:
Yeast    63 LD---------SIDD-----APTSLDCNNNLILVGCNELFNDSSMENVNHHLRKFVFEQEHLKFV 113

  Fly   445 SRYKF------------------------ASGAEEKIVRTFQAPANFIENFRHISGIENDDAGDV 485
            :...|                        ||.....::|... |.|..||:...:|.|.:|    
Yeast   114 ASIDFNRTTDPSVFTKFVYINQRATVAAIASSEVPTVIRIID-PRNLTENYEIETGREVND---- 173

  Fly   486 LLDSLPKGASVPSLGLSNKAVYKVDSEVESTSKTSKDEYPDNYFVPIALETPPQEETLMQNTLWP 550
             |...|.|..: |...||.  .:|.|..:......|.::..|..:       .....|..|||..
Yeast   174 -LHFAPNGILL-SYITSNS--LEVASVRDGNFVARKTDFDKNLVL-------SNIRFLNDNTLLV 227

  Fly   551 ELQKLYGHGYEIFALAATADGSLLASTCK----------------------ASNAEHAQIILWNP 593
            ........|..:..|..::.|..:..|..                      :||.....|:    
Yeast   228 AASLSNSDGVSLLKLGVSSKGVKILKTASFMFDLNGITSMDVSPNKKFVALSSNDNLVAIV---- 288

  Fly   594 SNWKQIQKLS-------GHQLTVTQLSFSPDSRYLLSVSRDRRWCLYERQDSSVSYQLVASTDKS 651
                .::||.       .|:.|:|:::||||||||.|.|          ..::::...::.|..|
Yeast   289 ----SVEKLKLVQLVPRVHESTITKVTFSPDSRYLASTS----------MGNTINVLKLSGTSSS 339

  Fly   652 NGVHTRIIW----------------SCDWSHDGQFFVTSSRDGKVVVWKKEEDCKESSLNGWQAN 700
               ..|.||                ...:.|:...|          ::|...|..:|..      
Yeast   340 ---ILRNIWKFFLNFVLLVVLAGAIQLGYKHNVHGF----------IYKHAHDIYKSKF------ 385

  Fly   701 GVLELKNESITAVAFSNSYLSGTDD 725
                  .|:.|....|:||.:..||
Yeast   386 ------KENTTIDQGSSSYFTINDD 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Elp2NP_610600.1 WD40 repeat 18..55 CDD:293791
WD40 50..412 CDD:475233 19/82 (23%)
WD40 repeat 104..145 CDD:293791
WD40 repeat 150..202 CDD:293791
WD40 repeat 209..281 CDD:293791
WD40 repeat 291..331 CDD:293791
WD40 repeat 337..382 CDD:293791 15/50 (30%)
WD40 repeat 389..412 CDD:293791 3/22 (14%)
WD40 <548..792 CDD:441893 40/223 (18%)
WD40 repeat 563..604 CDD:293791 8/69 (12%)
WD40 repeat 609..652 CDD:293791 12/42 (29%)
WD40 repeat 660..695 CDD:293791 6/50 (12%)
WD40 repeat 702..758 CDD:293791 7/24 (29%)
WD40 repeat 764..791 CDD:293791
SED4NP_009993.1 WD40 <142..335 CDD:441893 46/226 (20%)
WD40 repeat 172..209 CDD:293791 10/44 (23%)
WD40 repeat 214..253 CDD:293791 7/45 (16%)
WD40 repeat 265..300 CDD:293791 5/42 (12%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.