DRSC/TRiP Functional Genomics Resources

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Protein Alignment Elp2 and ciao-1

DIOPT Version :9

Sequence 1:NP_610600.1 Gene:Elp2 / 36123 FlyBaseID:FBgn0033540 Length:794 Species:Drosophila melanogaster
Sequence 2:NP_493247.2 Gene:ciao-1 / 173152 WormBaseID:WBGene00012479 Length:337 Species:Caenorhabditis elegans


Alignment Length:380 Identity:70/380 - (18%)
Similarity:138/380 - (36%) Gaps:101/380 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   468 IENFRHISGIENDDAGDVLLDSLPKGASVPSLGLSNKAVY------KVDSEVESTSKTSKDEYPD 526
            |..|.|..  |.||...|.:.....|..:.:....:|||.      :.||::....:|:.|:   
 Worm     5 IGEFYHQG--EKDDTSRVWMTCWHHGGRILASCGDDKAVRVWSLVGEPDSKMRLECRTTLDD--- 64

  Fly   527 NYFVPIALETPPQEETLMQNTLWPELQKLYGHGYEIFALAATADGSLLASTCKASNAEHAQIILW 591
                                          .|...:.::|.:.||.     |..|.:..|.::::
 Worm    65 ------------------------------SHTRAVRSVAFSNDGK-----CLVSASFDASVVVY 94

  Fly   592 NPSN--WKQIQKLSGHQLTVTQLSFSPDSRYLLSVSRDRR---WCLYERQDSSVSYQLVAST--- 648
            ...:  :.::.||.||:..|....||....:|.:.|||:.   |...|.:|.|||..|...|   
 Worm    95 QQEDGEFAEVNKLEGHESEVKCAVFSKSDEFLATCSRDKSVWFWQQDEDEDFSVSSILQPHTQDV 159

  Fly   649 ----------------------------------DKSNGVHTRIIWSCDWSHDGQFFVTSSRDGK 679
                                              .|.:|.|...:||..:..:|...||...|..
 Worm   160 KQVAWHPTEDLLVSCSYDSSIRFYRFDGEDWVTQQKIDGCHVGTVWSIAFDTEGHRLVTVGEDHC 224

  Fly   680 VVVWKKEE-DCKESSLNGWQANGVLELKNE--SITAVAFSNSYLSGTDDTYILALGTETGLIKIY 741
            :.::.:|. ..|.:..:.|::....:::|.  .:.:||:::     |:|  ::|.|.....|:::
 Worm   225 IQLFVRENIGSKSADQDTWKSVARYDVENTRWPLYSVAWNS-----TND--VIATGGGDCKIRLF 282

  Fly   742 QFVRGAWK-LLSDLNKSQAHHLTVRRLQFRPGKQLQ--LASCGEDHLVRIYDIKL 793
            :....... ::..|.....|.|.|..:.:.|..:..  |.|..:|..:|::::::
 Worm   283 KISSTPESPVIEHLGVVGRHELDVNHVAWNPNPKFSNLLTSASDDGTIRLWELEI 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Elp2NP_610600.1 WD40 <2..236 CDD:225201
WD40 repeat 18..55 CDD:293791
WD40 50..412 CDD:295369
WD40 repeat 104..145 CDD:293791
WD40 repeat 150..202 CDD:293791
WD40 repeat 209..281 CDD:293791
WD40 237..741 CDD:225201 61/323 (19%)
WD40 repeat 291..331 CDD:293791
WD40 repeat 337..382 CDD:293791
WD40 repeat 389..412 CDD:293791
WD40 552..790 CDD:295369 55/285 (19%)
WD40 repeat 563..604 CDD:293791 8/42 (19%)
WD40 repeat 609..652 CDD:293791 16/82 (20%)
WD40 repeat 660..695 CDD:293791 8/35 (23%)
WD40 repeat 702..758 CDD:293791 9/58 (16%)
WD40 repeat 764..791 CDD:293791 6/28 (21%)
ciao-1NP_493247.2 WD40 <14..336 CDD:225201 66/366 (18%)
WD40 17..334 CDD:238121 64/361 (18%)
WD40 repeat 25..64 CDD:293791 7/38 (18%)
WD40 repeat 71..109 CDD:293791 8/42 (19%)
WD40 repeat 114..153 CDD:293791 13/38 (34%)
WD40 repeat 160..197 CDD:293791 1/36 (3%)
WD40 repeat 204..250 CDD:293791 9/45 (20%)
WD40 repeat 258..300 CDD:293791 8/48 (17%)
WD40 repeat 306..333 CDD:293791 6/26 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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