DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Git and Arfgap3

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:NP_001344685.1 Gene:Arfgap3 / 66251 MGIID:1913501 Length:525 Species:Mus musculus


Alignment Length:717 Identity:143/717 - (19%)
Similarity:220/717 - (30%) Gaps:297/717 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 DPATPTISTRSKMPRGKSRLQTEVCGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSL 89
            ||:...|....|  |.:|....:||.||||.:||||||:.|:.||.||...|||||.|:|.::|.
Mouse     3 DPSKQDILAIFK--RLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRST 65

  Fly    90 R-QGNWEPSVLNFVNSLNAHGANSVWEHHLLDGSTNSTGGKHVPR-------------------- 133
            . ..||....|..:.......|:|.:..|  ..:|..|..|:..|                    
Mouse    66 ELDSNWSWFQLRCMQVGGNSNASSFFHQH--GCATKDTNAKYNSRAAQLYREKIKTLATQATRRH 128

  Fly   134 ----WR--------KPTPKDALHPTKSDFIKAKHVNLTFVLKPSLQDDDDGNGSAGCLEQELSRQ 186
                |.        .|.||:      .||. |.|.:|                       |:|..
Mouse   129 GTDLWLDSCAAPPVSPPPKE------EDFF-ASHASL-----------------------EVSGA 163

  Fly   187 LHASVRTSN-------LETSLRFLVQGADPNYYHEDKLSTPLHMAAKFGQASQIEMLLIYGADVN 244
            :.||.:..:       |||                    ||.......||...:|.|        
Mouse   164 MQASAQPESASSTPWGLET--------------------TPEKHEGGPGQGPSVEGL-------- 200

  Fly   245 ALDGNGMTPLELARANNHNTIAERLLDAMYDVTDRIITFLGGKKPDHASGRHMIIPDANGADISE 309
                  .||.:.|.|...:.|.                    |||:.|               .:
Mouse   201 ------NTPGKAAPAEVSSIIK--------------------KKPNQA---------------KK 224

  Fly   310 QLKIARGKL--QLVPNKMFEELVMDLYDEVDRRECEAIWSTSTLNADHATVPFLPANPFLSATRN 372
            .|...:|.|  |.:.|..|.|:         .::.:|:                        .:.
Mouse   225 GLGAKKGSLGAQKLTNTSFTEI---------EKQAQAV------------------------DKR 256

  Fly   373 QGRQKLARFNRAEFTGLLTDVLVDAMR--------------RQNMANLRPMDAPVAGHQSLQSLP 423
            :.::.|||....|      :.:|.::|              |.|::..:.::|...|        
Mouse   257 KEQEDLARGAPKE------ESIVSSLRLAYKDLEISRKKDERLNLSGQKKVEAERLG-------- 307

  Fly   424 YANNSMLLGSFEQGGHDPNLSDDEPIYDPVASDDDYAPVPPMAQQAIVHTPPRSANSHNEMETLR 488
                 |..||...|           |...|.||          .|.|          ..|..||.
Mouse   308 -----MGFGSCRSG-----------ISHSVTSD----------MQTI----------EQESPTLA 336

  Fly   489 KQLNDYKSEINQLKNVVQMLSSENTQLKSKFSSASNNSVYDEPLRI-DLSLSSPDTEHEPLSLPE 552
            |....|:.:...     ...||     .||:|..|::..:|:|:.: ..|.||.|         :
Mouse   337 KPRRKYQEDPED-----SYFSS-----SSKWSEQSSSRYFDDPMELRSSSFSSWD---------D 382

  Fly   553 GGTANGESGSSNDSS----NQSTIKRPASMYERRLVPNVAKGNTDIRNTTSMYQMAGDGKPFGEE 613
            |..:..:..||.|..    :..:..||::..:....|        |.:|....:..|:.|....:
Mouse   383 GADSYWKKDSSRDPEPAMRSTGSSDRPSARRKPEYEP--------IGSTDEAQKKFGNVKAISSD 439

  Fly   614 ----VKVRSDLVTR-RLKEL-----IRAMQPVPEDQKQSIAPHGELIRSAVTDLIALYANLPPNA 668
                ::.::|..|| ||:.|     |.:.....|.:||:...:.             .:|:.|||
Mouse   440 MYFGIQAQTDFETRARLERLSTSSSISSADLFDEQRKQTAGNYN-------------LSNVLPNA 491

  Fly   669 SD 670
            .|
Mouse   492 PD 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 44/148 (30%)
Ank_2 187..279 CDD:289560 16/98 (16%)
ANK <187..270 CDD:238125 16/89 (18%)
ANK repeat 187..213 CDD:293786 5/32 (16%)
ANK repeat 215..247 CDD:293786 6/31 (19%)
ANK repeat 249..279 CDD:293786 5/29 (17%)
GIT_SHD 314..342 CDD:285690 6/29 (21%)
GIT 374..404 CDD:128828 8/43 (19%)
GIT1_C 609..727 CDD:289013 15/72 (21%)
Arfgap3NP_001344685.1 ArfGap 13..116 CDD:214518 38/106 (36%)
CDC27 <134..>292 CDD:312868 44/295 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..206 13/77 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..271 5/51 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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