DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Git and SMAP2

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:NP_073570.1 Gene:SMAP2 / 64744 HGNCID:25082 Length:429 Species:Homo sapiens


Alignment Length:450 Identity:91/450 - (20%)
Similarity:155/450 - (34%) Gaps:121/450 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 CGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGNWEPSVLNFVNSLNAHGANSV 113
            |.||.:..|.|||.|.|:.:|..|..:||:||.|||.|||:....|....:..:..:....||.:
Human    28 CADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRL 92

  Fly   114 WEHHLLDGSTNSTGGKHVPRWRKPTPKDALHPTKSDFI-----KAKHVNLTFVLKPSLQDDDD-- 171
            :|.:|.:            .:|:|    .:.|....||     |.|:::.:..:....::.||  
Human    93 YEAYLPE------------TFRRP----QIDPAVEGFIRDKYEKKKYMDRSLDINAFRKEKDDKW 141

  Fly   172 GNGSAGCLEQELSRQLHASVRTSNLETSLRFLVQGADPNYYHEDKLSTPLHMAAKFGQASQIEML 236
            ..||....|::|...:...|:...         :..||            .:..|....|...::
Human   142 KRGSEPVPEKKLEPVVFEKVKMPQ---------KKEDP------------QLPRKSSPKSTAPVM 185

  Fly   237 LIYGADVNALDGNGMTPL--ELARANNHNTIAERLLDAMYDVTDRIITFLGGKKPDHASGRHMI- 298
            .:.|.|         .|:  .:|.:...||: |:.||.:..|          ..|..:..|.:: 
Human   186 DLLGLD---------APVACSIANSKTSNTL-EKDLDLLASV----------PSPSSSGSRKVVG 230

  Fly   299 -IPDANGA-DISEQLKI---------ARGKLQLVPNKMFEELVMDLY-DEVDRRECEAIWSTSTL 351
             :|.|..| .:.|.|.:         ..||.||     .::.::.|| .:..:...:|::.....
Human   231 SMPTAGSAGSVPENLNLFPEPGSKSEEIGKKQL-----SKDSILSLYGSQTPQMPTQAMFMAPAQ 290

  Fly   352 NADHATVPFLP-ANPFLSATRNQGRQKLARFNRAEFTGLLTDVLVDA-----------------M 398
            .|.....|..| ..|..|...:.....:....:...:|::..:.:.|                 |
Human   291 MAYPTAYPSFPGVTPPNSIMGSMMPPPVGMVAQPGASGMVAPMAMPAGYMGGMQASMMGVPNGMM 355

  Fly   399 RRQN---MANLRPMDAPVAGHQSLQSLPY----------------ANNSMLLGSFEQGGH 439
            ..|.   ||.:..|...|.|.|..|.|.:                ||..|..|....||:
Human   356 TTQQAGYMAGMAAMPQTVYGVQPAQQLQWNLTQMTQQMAGMNFYGANGMMNYGQSMSGGN 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 33/119 (28%)
Ank_2 187..279 CDD:289560 15/93 (16%)
ANK <187..270 CDD:238125 12/84 (14%)
ANK repeat 187..213 CDD:293786 3/25 (12%)
ANK repeat 215..247 CDD:293786 4/31 (13%)
ANK repeat 249..279 CDD:293786 8/31 (26%)
GIT_SHD 314..342 CDD:285690 6/28 (21%)
GIT 374..404 CDD:128828 4/49 (8%)
GIT1_C 609..727 CDD:289013
SMAP2NP_073570.1 ArfGap_SMAP2 16..122 CDD:350083 32/109 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 138..184 11/66 (17%)
Interaction with clathrin heavy chains. /evidence=ECO:0000250 163..232 16/109 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 217..259 8/51 (16%)
Interaction with PICALM. /evidence=ECO:0000250 340..429 16/75 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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