DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Git and git2b

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:XP_005155464.1 Gene:git2b / 567190 ZFINID:ZDB-GENE-070112-2192 Length:738 Species:Danio rerio


Alignment Length:789 Identity:292/789 - (37%)
Similarity:406/789 - (51%) Gaps:162/789 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 RGKSRLQTEVCGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGNWEPSVLNFVN 103
            |.::|   |:|.||.|.|..|||||||:|:|.:|||:||.||||.|.|:.|.|.:|..|.|..|.
Zfish     4 RARNR---EICADCSAPDSRWASINRGVLICDECCSIHRGLGRHSSQVRHLTQTSWPSSQLQMVK 65

  Fly   104 SLNAHGANSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDALHPTKSDFIKAKHVNLTFVLKPSLQD 168
            ||..:||||:|||.|||.|:..:|.      ||..|:|.:||.|:||||||:..|.||.:...::
Zfish    66 SLYNNGANSIWEHSLLDPSSIMSGK------RKANPQDRVHPNKTDFIKAKYQMLAFVHRMPCRE 124

  Fly   169 DDDGNGSAGCLEQELSRQLHASVRTSNLETSLRFLVQGADPNYYHEDKLSTPLHMAAKFGQASQI 233
            ||      ....::||:|||:||||.||||.||.|..||..|::|.:|.:||||:|||.||..|.
Zfish   125 DD------SVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQLLQA 183

  Fly   234 EMLLIYGADVNALDGNGMTPLELARANNHNTIAERLLDAMYDVTDRIITFLGGKKPDHASGRHMI 298
            |:|.:||||..|.|.:|.||::.||...|..:|:||::..:::|||:..:|.|:||||.:|:|.|
Zfish   184 ELLTVYGADPGAPDSSGKTPIDYARQAGHQDLADRLVEIQFELTDRLAFYLCGRKPDHKNGQHFI 248

  Fly   299 IP---DAN-GADISEQLKIARGKLQLVPNKMFEELVMDLYDEVDRRECEAIW----STSTLNADH 355
            ||   |.| |.|:||..|.|:.|||.:.|..||||.||:||||||||.:|:|    :.|||..|.
Zfish   249 IPQIADRNVGLDLSELAKAAKKKLQSLSNHQFEELAMDVYDEVDRRETDAVWLATQNHSTLVTDT 313

  Fly   356 ATVPFLPANPFLSATRNQGRQKLARFNRAEFTGLLTDVLVDAMRRQ---NMANLRPMDAPVAGHQ 417
            ..|||||.||..|:|||||||||||||..||..|:.|:|.||.|||   :..|::.         
Zfish   314 TVVPFLPVNPEYSSTRNQGRQKLARFNAHEFATLVIDILTDAKRRQLGNSPDNVKD--------- 369

  Fly   418 SLQSLPYANNSMLLGSF--EQGGHDPNLSDDEPIYDPVASDDDYAPVPPMAQQAIVHTPPRSANS 480
                    |..::|...  .:|...|.|  |:|.||.||||:|....|...:.....:...|..|
Zfish   370 --------NVELILKDIGNRRGSESPEL--DQPDYDSVASDEDTEQEPTSGKDERTKSSESSDLS 424

  Fly   481 HN-----EMETLRKQLNDYKSEINQLKNVVQMLSSENTQLKSKFSSASN----------NSV--- 527
            .:     |...::..||..:::|.||..|...||.|...::||.:|..|          ||:   
Zfish   425 DSPITVQEFMEVKTALNASEAKIQQLLKVNCHLSEELRLMQSKLNSLQNENSNLKWQTPNSLVRP 489

  Fly   528 YDEPLRI------DLSLSS----------------PDTE--HEPL--------------SLP--- 551
            .|.|.|.      .:|:..                |||.  .:||              |||   
Zfish   490 QDVPHRAAPRGCRAMSMYETGSGLRQYHPRGETVHPDTNLTLQPLPSNIGKGPSVTAFSSLPTFP 554

  Fly   552 ------------EGGTANGESGSSNDSSNQSTIKRPASMYERRL-----------VPNVAKGNTD 593
                        .|.:.:|:||            .|||.|:..|           ..|.::.:..
Zfish   555 STLSWSWDEITQRGSSLDGQSG------------MPASDYDNTLNHAEMNESGTIQSNFSRASGW 607

  Fly   594 IRNTTSMYQMAGDGK-----PFGEEVKVRSDLVTRRLKELIRAMQPVPEDQKQSIAPHGELIRSA 653
            :.::|.:.:...:|:     |..|:|..:::|:|:.::||:||.|   |::..|.....|.|..|
Zfish   608 LGDSTVLSENHSEGESDSTLPCTEDVISKTELITKNIQELLRAAQ---ENKHASFVTCSERILLA 669

  Fly   654 VTDLIALYANLPPNASDPSRETLKLLTRQNILIQHECENLQKAIEADDKQAIQKNTLEVRDCAFH 718
            ||::..|:...|  :|:..|.:|:|||.....:|.||   |||...|.:|.||        ||:.
Zfish   670 VTEMATLFPKRP--SSETVRGSLRLLTSSASRLQGEC---QKATPHDSQQVIQ--------CAYD 721

  Fly   719 IASAIKTLV 727
            ||.|.|.||
Zfish   722 IAKAAKQLV 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 61/115 (53%)
Ank_2 187..279 CDD:289560 46/91 (51%)
ANK <187..270 CDD:238125 44/82 (54%)
ANK repeat 187..213 CDD:293786 16/25 (64%)
ANK repeat 215..247 CDD:293786 18/31 (58%)
ANK repeat 249..279 CDD:293786 10/29 (34%)
GIT_SHD 314..342 CDD:285690 18/27 (67%)
GIT 374..404 CDD:128828 19/32 (59%)
GIT1_C 609..727 CDD:289013 41/117 (35%)
git2bXP_005155464.1 ANK <123..220 CDD:238125 49/102 (48%)
Ank_2 137..229 CDD:289560 46/91 (51%)
ANK repeat 137..165 CDD:293786 17/27 (63%)
ANK repeat 167..197 CDD:293786 17/29 (59%)
GIT_SHD 268..296 CDD:285690 18/27 (67%)
GIT_SHD 332..359 CDD:285690 17/26 (65%)
GIT_CC 427..481 CDD:293167 14/53 (26%)
GIT1_C 628..732 CDD:289013 43/119 (36%)
ArfGap 5..124 CDD:214518 63/127 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 148 1.000 Domainoid score I4416
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 414 1.000 Inparanoid score I1809
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D175450at33208
OrthoFinder 1 1.000 - - FOG0003139
OrthoInspector 1 1.000 - - otm25285
orthoMCL 1 0.900 - - OOG6_104890
Panther 1 1.100 - - O PTHR46097
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3769
SonicParanoid 1 1.000 - - X2107
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1111.000

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