DRSC/TRiP Functional Genomics Resources

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Protein Alignment Git and smap2

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:NP_001038260.1 Gene:smap2 / 556132 ZFINID:ZDB-GENE-060503-374 Length:418 Species:Danio rerio


Alignment Length:74 Identity:28/74 - (37%)
Similarity:38/74 - (51%) Gaps:0/74 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 QTEVCGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGNWEPSVLNFVNSLNAHG 109
            :.:.|.||.|..|.|||.|.||.:|..|..:||:||.|||.|||:....|....:..|..:....
Zfish    24 ENKFCADCYAKGPRWASWNLGIFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQSVQEMGNAK 88

  Fly   110 ANSVWEHHL 118
            |..::|..|
Zfish    89 ARRLYEAFL 97

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 28/71 (39%)
Ank_2 187..279 CDD:289560
ANK <187..270 CDD:238125
ANK repeat 187..213 CDD:293786
ANK repeat 215..247 CDD:293786
ANK repeat 249..279 CDD:293786
GIT_SHD 314..342 CDD:285690
GIT 374..404 CDD:128828
GIT1_C 609..727 CDD:289013
smap2NP_001038260.1 COG5347 13..>275 CDD:227651 28/74 (38%)
ArfGap 13..115 CDD:279720 28/74 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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