DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Git and CG8243

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:NP_610424.1 Gene:CG8243 / 35890 FlyBaseID:FBgn0033349 Length:517 Species:Drosophila melanogaster


Alignment Length:640 Identity:128/640 - (20%)
Similarity:213/640 - (33%) Gaps:189/640 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 RSKMPRGKSR-LQTEV--------CGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSL 89
            |:|:.:.|.: |.|::        |.||.|..|.|||.|.|:.||..|..:||:||.|||.|||:
  Fly     9 RTKLIQEKCQTLLTQMLRDEDNKYCVDCDAKGPRWASWNLGMFLCIRCAGIHRNLGVHISRVKSV 73

  Fly    90 RQGNWEPSVLNFVNSLNAHGANSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDALHPTKSDFIKAK 154
            ....|.|..:..:..:....|.:|:|..|.||            :|:|....||    .:||:||
  Fly    74 NLDTWTPEQVISLQQMGNSRARAVYEAQLPDG------------FRRPQTDTAL----ENFIRAK 122

  Fly   155 HVNLTFVLKPSLQDDDDGNGSAGCLEQELSRQLHASVRTSNLETSLRFLVQGADPNYYHEDKLST 219
            :.:..::.:..:.........|..:::||.||......|....|                     
  Fly   123 YEHKKYLAREWVPPSPPKVDWAKEIDEELERQKRKKKSTQAQAT--------------------- 166

  Fly   220 PLHMAAKFGQASQIEMLLIYGADVNALDGNGM-TPLELARANNHNTIAERLLDAMYDVTDRIITF 283
             |.:|...|.:....   :.|:..:||....: .||...:.|.                      
  Fly   167 -LGLAGVAGGSGDKR---LSGSSASALKNTPLPAPLPKPKPNQ---------------------- 205

  Fly   284 LGGKKPDHASGRHMIIPDANGADISEQLKIARGKLQLVPNKMFEELVMDLYDEVDRRECEAIWST 348
            :||..|.......:.....:.|..|:.|.::.....:|.....::|..:.:             |
  Fly   206 VGGCSPKTTQRVQLNSSGVSSAGESDLLGLSSPTKPIVATNASQDLQNESF-------------T 257

  Fly   349 STLNADHATVPFLPANPFLSATRNQGRQKLARFNRAEFTGLLTDVLVDAMRRQNMANLRPMDAPV 413
            |.|:|:  ::...|..|..|           ..:.|...|...:.|  |...|:..|...:.|  
  Fly   258 SFLSAE--SIAGQPDKPIGS-----------NGDAANLMGSKPNSL--AQEEQDFFNQGSLGA-- 305

  Fly   414 AGHQSLQSLPYANNSML-LGSFEQGGHDPNLSDDEPIYDPVASDDDYAP---VPPMAQQAIVH-- 472
            .|::..||...:.:|:| |.......|:|.::        .......||   :....||.|.|  
  Fly   306 GGNEKDQSGKMSKDSILALYGSAPATHNPQMN--------FGGFTGMAPGGYMHQQQQQQIPHQF 362

  Fly   473 -TPPRSANSHNEMETLRKQLNDYKSEINQLKNVVQMLSSENTQLKSKFSSASNNSVYDEPLRIDL 536
             |||.|.:.:|.                      .::::.|....:..|||:..|:         
  Fly   363 MTPPNSVSMYNS----------------------PVMAAPNAFSNAAISSATAMSM--------- 396

  Fly   537 SLSSPDTEHEPLSLPEGGTANGESGSSNDSSNQSTIKRPASMYERRLVPNVAKGNTDIRNTTSMY 601
                             |.::|.:|:...|:..|              |..|.|.....|.....
  Fly   397 -----------------GGSHGFTGAQFPSTGGS--------------PYAAAGQAAATNLMQTN 430

  Fly   602 QMAGDGKP-FG----EEVKVRSDLVTRRLKEL----IRAMQPVPEDQKQSIAPHG 647
            |....|.| ||    ::.:.:..|..:...:|    :..|||:|........|.|
  Fly   431 QSILSGMPLFGAVPQQQQQHQQQLQQQHHPQLGGLSMNLMQPLPSGLNIGQPPQG 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 39/123 (32%)
Ank_2 187..279 CDD:289560 11/92 (12%)
ANK <187..270 CDD:238125 11/83 (13%)
ANK repeat 187..213 CDD:293786 2/25 (8%)
ANK repeat 215..247 CDD:293786 5/31 (16%)
ANK repeat 249..279 CDD:293786 3/30 (10%)
GIT_SHD 314..342 CDD:285690 2/27 (7%)
GIT 374..404 CDD:128828 5/29 (17%)
GIT1_C 609..727 CDD:289013 11/48 (23%)
CG8243NP_610424.1 ArfGap 18..132 CDD:279720 41/129 (32%)
COG5347 20..300 CDD:227651 77/370 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464122
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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