DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Git and Asap

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:NP_001014504.1 Gene:Asap / 35783 FlyBaseID:FBgn0050372 Length:1155 Species:Drosophila melanogaster


Alignment Length:742 Identity:158/742 - (21%)
Similarity:260/742 - (35%) Gaps:237/742 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 HSDP-ATPTISTRSK--------MPRGKSRLQTEVCGDCGA-GDPSWASINRGILLCADCCSVHR 77
            |::| .:|::....|        :| |..|     |.|||: .|.:|.|:|.|||:|..|..|||
  Fly   413 HANPQMSPSLVELQKTVIRYVQLLP-GNDR-----CCDCGSRNDVTWISLNFGILVCIQCSGVHR 471

  Fly    78 SLGRHISIVKSLRQGNWEPSVLNFVNSLNAHGANSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDA 142
            .||.|.|.::||...|...:.|....::.....|.:.|..|..|..     :|          ::
  Fly   472 DLGVHHSRIQSLTLDNLTTANLLIARAMGNSTLNDIMEAKLGRGKL-----QH----------ES 521

  Fly   143 LHPTKSDFIKAKHVNLTFVLKPSLQDDDDGNGSAGC-LEQ-----ELSRQLHASVRTSNL----- 196
            ....:.|||:||:|...:|:: :..||:|    ..| |||     ::|:.|......::|     
  Fly   522 SMEERYDFIRAKYVAKRYVMR-TCSDDND----LRCDLEQAVVNADMSQLLQVWAEGADLTCCLP 581

  Fly   197 -----ETSLR---------------FLVQGADPNYYHE----------DKLSTPLHMAAKFGQAS 231
                 ||:|.               ||:|...|...::          ...:|.||:.|...:..
  Fly   582 SSDAGETALHLAVLREMGSTLHIVDFLIQNMPPKGLNKATNPAGLLDVTGKNTALHLCALHDRRE 646

  Fly   232 QIEMLLIYGADVNALDGNGMTPLELARANNHNTIAERLLDAMYDVTDRIITFLGGKKPDHASGRH 296
            .:::||..|||....:....|.|::|:...||:..|.:..|:              |.:.::..|
  Fly   647 CMKLLLRSGADYELKNSQNKTALDIAKEMGHNSCRELIECAI--------------KREKSAFDH 697

  Fly   297 M----IIPDANGA-DISEQLKIARGKLQLVPNKMFEELVMDLYDEVDRRE--------------- 341
            :    .:|:.:|: |.|:                 :|.|:|     :|:.               
  Fly   698 INTDWNLPNEDGSTDFSD-----------------DETVID-----ERKSRSRPPSFAGGDSPVL 740

  Fly   342 ------CEAIWSTSTLNADHATVPFLPANPFLSATRNQGRQKLARFNRAEFTGLLTDVLVDAMRR 400
                  |::|.|:|:..|:..:..|...:...|.|.:.|.......:..::.|..|:|   ....
  Fly   741 RSRSSTCDSIQSSSSPIANCPSRQFTLPSGLPSYTHSAGTSPKQHISVGQYLGSATNV---GGNG 802

  Fly   401 QNMANLRPMDAPVAGHQSLQSLPYANNSMLLGSFEQGGHDPNLSDDEPIYDPVASDDDYAPVPPM 465
            .......|..|      |.||:..|.||:.:.| :.|||...........:..:.....||.||.
  Fly   803 PGNGGSSPSSA------SSQSVRAARNSLNMQS-DLGGHVTGARKSTSTANMNSLKKRTAPAPPP 860

  Fly   466 AQQAIVHTPPRSANSHNEMETL----RKQLNDYKSEINQLKNVVQMLS---SENTQLKSKFSS-- 521
            ....       ||:|.:...||    |...|...|:|..:.:..|.|.   .....|:|..||  
  Fly   861 GTLG-------SASSSSFYGTLPHPPRHSQNFDASDIRAINHKNQSLDVAYGTLPHLRSVESSPR 918

  Fly   522 ------------------ASNNSVY-------------DEPLRIDLSLSS-----------PDTE 544
                              .||||:.             .|.|..::.|:.           |..:
  Fly   919 GGGGYGYGVSQDPGGSGNGSNNSLMPAMTTFGHKRSPSGESLNRNIHLAGAKLVLPPTGELPTLK 983

  Fly   545 HEPLS------LPEGG------TANGESGSSNDSSNQSTIKRPASMYERRLV------PNVAKGN 591
            |...|      :|..|      .:||:|..|..|.::..:..|     |:||      |:....:
  Fly   984 HVDKSALTRPKIPPPGPPSEREISNGQSNESISSMDEGPVAPP-----RKLVNQSANFPDYESWH 1043

  Fly   592 TDIRNTTSMYQMAGDGKPFGEEVKVRS 618
            ||:       ..:|.|.....|..|.|
  Fly  1044 TDM-------DSSGGGLDHSAESNVSS 1063

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 36/116 (31%)
Ank_2 187..279 CDD:289560 25/126 (20%)
ANK <187..270 CDD:238125 24/117 (21%)
ANK repeat 187..213 CDD:293786 9/50 (18%)
ANK repeat 215..247 CDD:293786 9/31 (29%)
ANK repeat 249..279 CDD:293786 7/29 (24%)
GIT_SHD 314..342 CDD:285690 4/48 (8%)
GIT 374..404 CDD:128828 4/29 (14%)
GIT1_C 609..727 CDD:289013 3/10 (30%)
AsapNP_001014504.1 BAR_ASAPs 35..249 CDD:153288
PH_ASAP 302..410 CDD:270071
ArfGap_ASAP 425..541 CDD:350063 39/136 (29%)
Ank_2 554..662 CDD:403870 22/107 (21%)
ANK repeat 586..622 CDD:293786 7/35 (20%)
ANK repeat 624..662 CDD:293786 9/37 (24%)
Ank_2 636..>693 CDD:403870 16/70 (23%)
SH3_ASAP 1095..1149 CDD:212755
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464123
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.