DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Git and Git2

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:XP_006530402.1 Gene:Git2 / 26431 MGIID:1347053 Length:761 Species:Mus musculus


Alignment Length:795 Identity:283/795 - (35%)
Similarity:402/795 - (50%) Gaps:163/795 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 TEVCGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGNWEPSVLNFVNSLNAHGA 110
            ::||.||...||||||:|||..:|.:|||||||||||||.|:.|:...|.|::|..|.:|..:||
Mouse     8 SDVCADCNGPDPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVETLYNNGA 72

  Fly   111 NSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDALHPTKSDFIKAKHVNLTFVLKPSLQDDDDGNGS 175
            ||:|||.|||.::..:|.      ||..|:|.:||.|::||:||:..|.||.:...::||     
Mouse    73 NSIWEHSLLDPASIMSGR------RKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDD----- 126

  Fly   176 AGCLEQELSRQLHASVRTSNLETSLRFLVQGADPNYYHEDKLSTPLHMAAKFGQASQIEMLLIYG 240
             ....::||:|||:||||.||||.||.|..||..|::|.:|.|||||:|:|.||..|.|:|.:||
Mouse   127 -SVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAELLAVYG 190

  Fly   241 ADVNALDGNGMTPLELARANNHNTIAERLLDAMYDVTDRIITFLGGKKPDHASGRHMIIPDAN-- 303
            ||....|.:|.||::.||...|:.:||||::..|::|||:..:|.|:||||.||:|.:||...  
Mouse   191 ADPGTQDSSGKTPVDYARQGGHHELAERLIEIQYELTDRLAFYLCGRKPDHKSGQHFLIPQRADR 255

  Fly   304 --GADISEQLKIARGKLQLVPNKMFEELVMDLYDEVDRRECEAIW----STSTLNADHATVPFLP 362
              ..|:||..|.|:.|||.:.|.:||||.||:||||||||.:|:|    :.|||..:...|||||
Mouse   256 RLSLDLSELAKAAKKKLQSLSNHLFEELAMDVYDEVDRRETDAVWLATQNHSTLVTETTVVPFLP 320

  Fly   363 ANPFLSATRNQGRQKLARFNRAEFTGLLTDVLVDAMRRQNMANL-RPMDAPVAGHQSLQSLPYAN 426
            .||..|:|||||||||||||..||..|:.|:|.||.|||..:.| |..|               |
Mouse   321 VNPEYSSTRNQGRQKLARFNAHEFATLVIDILSDAKRRQQGSPLSRSKD---------------N 370

  Fly   427 NSMLLGSFEQGGHDPNLSDDEPIYDPVASDDDYAPVPPMAQQAIVHTPPRSANSHNEM------- 484
            ..::|.:........:..:|:|.||.||||:|          ..|.|....||....:       
Mouse   371 VELILRTVSTQHSTESQDNDQPDYDSVASDED----------TDVETRASKANRQKSLDSDLSDG 425

  Fly   485 -----------------ETLRKQL----NDYKSEINQLKNVVQMLSSENTQLKSKFS-------- 520
                             |..|:||    |:...|:..::..:|.|.|||:.|:.:.:        
Mouse   426 PVTVQEFMEVKSALVASEAKRQQLMKVNNNLSDELRIMQKKLQTLQSENSSLRRQATASACQVQT 490

  Fly   521 ------SASNNSVYDEPLRIDLSLSSPDTEHEPLS-----LPEGGTANGE--------------- 559
                  :||::|:...|   ....|.|.:.:|..|     ||.|..::.|               
Mouse   491 GSDHKDTASHSSLKRRP---SARGSRPMSMYETGSGQKPYLPMGEASHPEESRTRLQPFPTHIGR 552

  Fly   560 -----SGSSNDS-------SNQSTIKRPASMYERRLVPNVAKGNTDI-------------RNTTS 599
                 |.||..|       |...:.:|.:.:.::...|.....||..             |..:.
Mouse   553 SALVTSSSSLPSFPSTLSWSRDESARRASRLEKQNSTPESDYDNTACDPEPDDTGSTRKGRQRSM 617

  Fly   600 MYQMAGDG---------------KPFGEEVKVRSDLVTRRLKELIRAMQPVPEDQKQSIAPHGEL 649
            ::|  |||               .|..|:|..:::.:|:.::||:||.|   |::..|..|..|.
Mouse   618 LWQ--GDGLLPDTAEPHSVPSPTLPSTEDVIRKTEQITKNIQELLRAAQ---ENKHDSYIPCSER 677

  Fly   650 IRSAVTDLIALYANLPPNASDPSRETLKLLTRQNILIQHECENLQKAIEADDK--QAIQKNTLEV 712
            |..|||::.||:...|  .||..|.:|:|||.....:|.||   :||:..|..  ..:|..|.:|
Mouse   678 IHVAVTEMAALFPKKP--KSDTVRTSLRLLTSSAYRLQSEC---RKALPGDSSLPTDVQLVTQQV 737

  Fly   713 RDCAFHIASAIKTLV 727
            ..||:.||.|.|.||
Mouse   738 IQCAYDIAKAAKQLV 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 59/115 (51%)
Ank_2 187..279 CDD:289560 47/91 (52%)
ANK <187..270 CDD:238125 44/82 (54%)
ANK repeat 187..213 CDD:293786 16/25 (64%)
ANK repeat 215..247 CDD:293786 17/31 (55%)
ANK repeat 249..279 CDD:293786 12/29 (41%)
GIT_SHD 314..342 CDD:285690 18/27 (67%)
GIT 374..404 CDD:128828 19/29 (66%)
GIT1_C 609..727 CDD:289013 42/119 (35%)
Git2XP_006530402.1 ArfGap_GIT2 1..111 CDD:350072 55/108 (51%)
Ank_2 137..229 CDD:372319 47/91 (52%)
ANK repeat 137..165 CDD:293786 17/27 (63%)
ANK repeat 167..197 CDD:293786 16/29 (55%)
GIT_SHD 268..296 CDD:369921 18/27 (67%)
GIT_SHD 332..360 CDD:369921 18/27 (67%)
GIT_CC 416..480 CDD:374629 12/63 (19%)
GIT1_C 640..754 CDD:371961 44/121 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 140 1.000 Domainoid score I4741
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41336
Inparanoid 1 1.050 416 1.000 Inparanoid score I1803
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003139
OrthoInspector 1 1.000 - - otm43651
orthoMCL 1 0.900 - - OOG6_104890
Panther 1 1.100 - - O PTHR46097
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3769
SonicParanoid 1 1.000 - - X2107
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.850

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