DRSC/TRiP Functional Genomics Resources

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Protein Alignment Git and Arfgap1

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:NP_001361599.1 Gene:Arfgap1 / 228998 MGIID:2183559 Length:424 Species:Mus musculus


Alignment Length:108 Identity:32/108 - (29%)
Similarity:52/108 - (48%) Gaps:12/108 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 ATPTISTRSKMPRGKSRLQTEVCGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQ 91
            |:|  .||..:...:::.:..||.:|||.:|.|.|:..||.:|.:|...||.||.|:|.|:|:..
Mouse     2 ASP--RTRKVLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTM 64

  Fly    92 GNWEPSVLNFVNSLNAHGANSVWEHHLLDGSTNSTGGKHVPRW 134
            ..|:...|..:.:    |.|:.:...|      .|...:.|.|
Mouse    65 DKWKDIELEKMKA----GGNAKFREFL------ETQDDYEPSW 97

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 28/87 (32%)
Ank_2 187..279 CDD:289560
ANK <187..270 CDD:238125
ANK repeat 187..213 CDD:293786
ANK repeat 215..247 CDD:293786
ANK repeat 249..279 CDD:293786
GIT_SHD 314..342 CDD:285690
GIT 374..404 CDD:128828
GIT1_C 609..727 CDD:289013
Arfgap1NP_001361599.1 ArfGap_ArfGap1 6..121 CDD:350059 30/102 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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