DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Git and git-1

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:NP_509761.2 Gene:git-1 / 181253 WormBaseID:WBGene00008805 Length:670 Species:Caenorhabditis elegans


Alignment Length:743 Identity:194/743 - (26%)
Similarity:323/743 - (43%) Gaps:142/743 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LQTEVCGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGNWEPSVLNFVNSLNAH 108
            |:.:.|.|||..:..|||:.:|.::|::|...|..||..:|.::.||:..|:...:..|::||..
 Worm    13 LEQKECDDCGKKEVEWASVKKGTVICSECFCFHSYLGPSVSYLRHLRKSAWDEEHIRLVHALNTS 77

  Fly   109 GANSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDALHPTKSDFIKAKHVNLTFVLKPSLQDDDDGN 173
            ..|.:||..|.:|||         :::||..:|..| .|..|:|.|:..|||  :|....|:|  
 Worm    78 NTNMIWESALYEGST---------KFQKPMAQDPSH-IKEQFVKEKYEKLTF--QPKRGKDED-- 128

  Fly   174 GSAGCLEQELSRQLHASVRTSNLETSLRFLVQGADPNYYHEDKLSTPLHMAAKFGQASQIEMLLI 238
                 ||..|:|||.|..|:.....:||.:..|||.||...:...|.||:||:.|.::|:|:|.:
 Worm   129 -----LENSLNRQLIACARSDFAHVTLRLIALGADVNYPDPETGDTALHVAAREGNSNQVELLFL 188

  Fly   239 YGADVNALDGNGMTPLELARANNHNTIAERLLDAMYDVTDRIITFLGGKKPDHASGRHMIIPDAN 303
            ||||:.|.:..||.|..|||...|..::.|:.:..:.|.||...|:..:|.||.:.:...||:..
 Worm   189 YGADIMAPNREGMLPYILARDAGHGQLSHRIYEFFFYVFDRFSFFMCNRKADHKNNQDFFIPEVT 253

  Fly   304 GADISEQLKIARGKLQLVPNKMFEELVMDLYDEVDRRECEAIWSTS--TLNADHATVPFLPANPF 366
            ......:...:|..:.::|...|.:|..|.:||..|||.|..|:.:  ...|...|..|||..|.
 Worm   254 EKQFLTKTNDSRAAISVLPKGQFFDLCEDAFDETVRRENEVNWNMTKWAKTAKGPTNLFLPPTPQ 318

  Fly   367 LSATRNQGRQKLARFNRAEFTGLLTDVLVDAMRRQNMANLRPMDAPVAGHQSLQSLPYANNSMLL 431
            :||.|||.|||||:|...:||.||.|::.|..||....|..|:..|....:.             
 Worm   319 MSAARNQRRQKLAKFTPIQFTILLIDLIKDQKRRITGDNPAPVSEPPKNMRK------------- 370

  Fly   432 GSFEQGGHDPNLSDDEPI----------YDPVA--SDDDYAPVPPMAQ------------QAIVH 472
                        |:|.|:          ||.||  |....:.:.|.:|            ..::.
 Worm   371 ------------SNDTPLRIMKKSEYADYDEVAGISCSPISGIVPNSQANTLDESSSRVWDELLE 423

  Fly   473 TPPRSANSHNEMETLRKQLNDYKSEINQLKNVVQMLSSENTQLKSKFSSASNNSVYD-------- 529
            ...|.:::...:.||.|| |:      :|..:|..|.::|..|.|:..: ..:.:|:        
 Worm   424 MKERLSSTETMVVTLTKQ-NE------ELTKLVHSLQAQNINLNSELIT-FRDDLYNLKRTNMTR 480

  Fly   530 ---EPLRIDLSLSSPDTEHEPLSLP------------EGGTANGESGSSN-DSSNQSTIKRPASM 578
               .||.|   :.:|:....|:.:.            :||.|...|.||: .:||...:.:....
 Worm   481 RMPSPLAI---VETPERVMPPVGIQQGFSRRDSEDRIDGGGARWRSNSSDRRNSNDHKLDKKVER 542

  Fly   579 YERRLVPNVAKGNTDIRNTTSMYQMAGDGKPFGEEVKVR----SDLVTRRLKELIRAMQPVPEDQ 639
            .:..::.:.:..:...:|.:.:.:         ||||.|    |:.:||.:|.|::.......|.
 Worm   543 RQDSMMESSSSLSRSSQNPSCLNR---------EEVKTRVIQQSEKITRHIKTLLQHGHNGNLDM 598

  Fly   640 KQSIAPHGELIRSAVTDLIALYANLPPNASDPSRETLKLLTRQNILIQHECEN--LQKAIEADDK 702
            ......|.  |..|:..||.:   |.|..   ..|.:..||...:|:..:|.:  |.        
 Worm   599 NARGGAHD--IACAINSLITI---LLPYV---RHEKIDTLTDAVVLLNAKCNSPVLM-------- 647

  Fly   703 QAIQKNTLEVRDCAFHIASAIKTLVLQF 730
                  .:::.|.|..||..::.::::|
 Worm   648 ------PMDIVDAAQTIAEKLRLIIMEF 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 38/115 (33%)
Ank_2 187..279 CDD:289560 33/91 (36%)
ANK <187..270 CDD:238125 32/82 (39%)
ANK repeat 187..213 CDD:293786 10/25 (40%)
ANK repeat 215..247 CDD:293786 14/31 (45%)
ANK repeat 249..279 CDD:293786 9/29 (31%)
GIT_SHD 314..342 CDD:285690 9/27 (33%)
GIT 374..404 CDD:128828 14/29 (48%)
GIT1_C 609..727 CDD:289013 28/123 (23%)
git-1NP_509761.2 ArfGap 7..127 CDD:214518 40/125 (32%)
ANK <122..212 CDD:238125 37/96 (39%)
Ank_5 152..207 CDD:290568 22/54 (41%)
ANK repeat 165..197 CDD:293786 14/31 (45%)
GIT 264..294 CDD:128828 10/29 (34%)
GIT 326..356 CDD:128828 14/29 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I5453
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 223 1.000 Inparanoid score I2264
Isobase 1 0.950 - 0 Normalized mean entropy S3377
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D175450at33208
OrthoFinder 1 1.000 - - FOG0003139
OrthoInspector 1 1.000 - - oto17351
orthoMCL 1 0.900 - - OOG6_104890
Panther 1 1.100 - - LDO PTHR46097
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3769
SonicParanoid 1 1.000 - - X2107
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.810

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